View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_high_3 (Length: 407)
Name: NF0952_high_3
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 166 - 378
Target Start/End: Original strand, 28986659 - 28986871
Alignment:
| Q |
166 |
ttcaacttgattaaattcatttctgttctttaatgatatatgtaactcactcaataataataccattcaatttgatatatgtattaaagttaaagttttt |
265 |
Q |
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| T |
28986659 |
ttcaacttgattaaattcatttctgttctttaatgatatatgtaactcactcaataataataccattcaatttgatatatgtattaaagttaaagttttt |
28986758 |
T |
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| Q |
266 |
taatcaattagattaacaaaaatgatttttggacactagacacaatataaacatacaattttaattacaagattaattattattttcatcttcttctttt |
365 |
Q |
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| T |
28986759 |
taatcaattacattaacaaaaatgatttttggacactagacacaatataaacatacaattttaattacaagattaattattattttcatcttcttctttt |
28986858 |
T |
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| Q |
366 |
tgtatgtatcaat |
378 |
Q |
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| T |
28986859 |
tgtatgtatcaat |
28986871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 28986461 - 28986634
Alignment:
| Q |
16 |
atatatataatcataatcacattcatcgagcttgggctaacgggtttgtgtctttgtgagccgcatagaatgtagagga-----------------ctta |
98 |
Q |
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| T |
28986461 |
atatatataatcataatcacattcatcgagcttgggctaacaggtttgtgtctttgtgagccgcatagaatgtagaggacttaggagaggagtattctta |
28986560 |
T |
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| Q |
99 |
gagccataggaagagttgctcttctcttctcccatttacaattgttccgttcattcttctaaaaatcttcaact |
172 |
Q |
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| T |
28986561 |
gagccataggaagagatgctcttctcttctcccatttacaattgttccgttcattcttctaaaaatcttcaact |
28986634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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