View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_high_6 (Length: 363)
Name: NF0952_high_6
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 16193376 - 16193051
Alignment:
| Q |
10 |
atgaacaaagtaatagaaaagctcttgaaatgctaccaccttcaaaggcaactagcatgaaataaggaaagaaagaatgagtctttaagatgacactatg |
109 |
Q |
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| T |
16193376 |
atgaacaaagtaatagaaaagctcttaaaatgctaccaccttcaaaggcaactaacatgaaataaggaaagaaataatgagtctttaagaggacactatg |
16193277 |
T |
|
| Q |
110 |
aatatcacaaacaagtgtttgtgactctctaccttccaaatcacaattcaaaatgctaggaatatttgaagtttgttgaagtggcttagatgaaagatca |
209 |
Q |
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| T |
16193276 |
aatatcacaaacaagtgtttgtgactctctaccttccaaatcacaattcaaaatgctaggaatatttgaaggttgttgaagtggcttagatgaaagatca |
16193177 |
T |
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| Q |
210 |
acaaaattaaagcaattatatatcaatatgcttgcagtttgataacaagttttgacaatcacttggtaccaaaaccattttgtaaggcttatgagtacta |
309 |
Q |
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| T |
16193176 |
acaaaattaaagccattatgtatcaatatccttgcagtttgataacaagttttgataatcatatggtaccaaaaccattttgtaaggcttatgagtacta |
16193077 |
T |
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| Q |
310 |
aaagaaacatgattcttgttcagttt |
335 |
Q |
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|||||||||| |||||| |||||||| |
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| T |
16193076 |
aaagaaacatcattctttttcagttt |
16193051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 39977142 - 39977259
Alignment:
| Q |
37 |
aaatgctaccaccttcaaaggcaactagcatgaaataaggaaagaaagaatgagtctttaagatgacactatgaatatcacaaacaagtgtttgtgactc |
136 |
Q |
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||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||| | |||| | ||| |||||||| |||||||||| |||||||||| |
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| T |
39977142 |
aaatgctgccaccttcaaaagcaacaagcatgaaataaggaaaaaatgaatgagaccttaataggactctatgaatgtcacaaacaattgtttgtgacat |
39977241 |
T |
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| Q |
137 |
tctaccttccaaatcaca |
154 |
Q |
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|||||||| |||||||| |
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| T |
39977242 |
tctaccttgtaaatcaca |
39977259 |
T |
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