View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_high_9 (Length: 333)
Name: NF0952_high_9
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 3881606 - 3881344
Alignment:
| Q |
29 |
acaagagagattgaattaactttttctcagccgaagcaatcttgtctggcgaaccaaatatccgtaacttcatgttgcgcctatcaaattgaatgtaagt |
128 |
Q |
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| T |
3881606 |
acaagagagattgaattaactttttctcagccaaagcaatcttgtccggcgaaccaaatatccgtaacttcatgttgcgcctatcaaattgaatgtaagt |
3881507 |
T |
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| Q |
129 |
tgaagtcgctttctgtattgagcttgtaagactagaaccatctttggacaatatgggctgtagagtggcaggggtgaggttgtcgtgaacaatgactttc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3881506 |
tgaagtcgctttctgtattgagcttgtaagactagaaccatctttggacaatatgggctgtagagtggcaggggtgaggttgtcgtggacaatgactttc |
3881407 |
T |
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| Q |
229 |
cctctccacagttcttccagaagtctcctaccttctgccaccgtctttgtggcattggctgtt |
291 |
Q |
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| T |
3881406 |
cctctccacagttcttccagaagtctcctaccttctgccaccgtctttgtggcattggctgtt |
3881344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 291
Target Start/End: Original strand, 39317791 - 39318048
Alignment:
| Q |
34 |
agagattgaattaactttttctcagccgaagcaatcttgtctggcgaaccaaatatccgtaacttcatgttgcgcctatcaaattgaatgtaagttgaag |
133 |
Q |
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| T |
39317791 |
agagattgaattaacttctgctgagccaaagcaatcctgttgggtgaaccaaaaatccgtaagttcagattttgcctgtcaaaaataatgtaagttcttg |
39317890 |
T |
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| Q |
134 |
tcgctttctgtattgagcttgtaagactagaaccatctttggacaatatgggctgtagagtggcaggggtgaggttgtcgtgaacaatgactttccctct |
233 |
Q |
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| T |
39317891 |
tctcttgctgtatagagcttttaagattaaagccatctctggacaacatgagctgtagagctgcaggagtgatgctgtcatggtcaatgactttccctct |
39317990 |
T |
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| Q |
234 |
ccacagttcttccagaagtctcctaccttctgccaccgtctttgtggcattggctgtt |
291 |
Q |
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| T |
39317991 |
cgacagttcttccagaggcctcctaacttctgccacagtctttgtggcattggctgtt |
39318048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 14012321 - 14012583
Alignment:
| Q |
29 |
acaagagagattgaattaactttttctcagccgaagcaatcttgtctggcgaaccaaatatccgtaacttcatgttgcgcctatcaaattgaatgtaagt |
128 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012321 |
acaagagagattgaattaactttttctcagccaaagcaatcttgtccggcgaaccaaatatccgtaacttcatgttgcgcctatcaaattgaatgtaagt |
14012420 |
T |
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| Q |
129 |
tgaagtcgctttctgtattgagcttgtaagactagaaccatctttggacaatatgggctgtagagtggcaggggtgaggttgtcgtgaacaatgactttc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14012421 |
tgaagtcgctttctgtattgagcttgtaagactagaaccatctttggacaatatgggctgtagagtggcaggggtgaggttgtcgtggacaatgactttc |
14012520 |
T |
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| Q |
229 |
cctctccacagttcttccagaagtctcctaccttctgccaccgtctttgtggcattggctgtt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012521 |
cctctccacagttcttccagaagtctcctaccttctgccaccgtctttgtggcattggctgtt |
14012583 |
T |
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