View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_10 (Length: 375)
Name: NF0952_low_10
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 5032665 - 5033026
Alignment:
| Q |
13 |
aatatagtaattgaaaattgacaagttgttataagtgcttgaaaattgtcaactagagcacattaagtgaaacaattatgtgtgataggtaaagaatcac |
112 |
Q |
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| T |
5032665 |
aatatagtaattgaaaattgacaagttgttataagtgcttgaaaattgtcaactag--cacattaagtgaaacaattatgtgtgataggtaaagaatcac |
5032762 |
T |
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| Q |
113 |
tctagcagtaatataaagagagaaccatactaacatgtgcgtaaaa-gaaatataaatatttgtcgtccttcatattcatatattttttccttccactag |
211 |
Q |
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| T |
5032763 |
tctagcagtaatataaagagagaaccatactaacatgtgcgtaaaaagaaatataaatatttgtcgtccttcatattcatatattttttccttccactag |
5032862 |
T |
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| Q |
212 |
caaaatggtatcacaagattcacaactaattaagtactaaaatatgtgtttattttttccaataaaatacaaaatgattttggaaagttaccggtagcac |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
5032863 |
caaaatggtatcacaagattcacaactatttaagtactaaaatatgtgtttattttttacaataaaatacaaaatgagtttggaaagttaccggtagcac |
5032962 |
T |
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| Q |
312 |
tac-ttatcaaattatctatctataaacaaaacggcactatttgtaaaaggattaggtaaaatc |
374 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
5032963 |
tactttatcaaattatctatctataaacaaaaaggcactatttgtaaaaggattagggaaaatc |
5033026 |
T |
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