View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_13 (Length: 357)
Name: NF0952_low_13
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_13 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 87 - 357
Target Start/End: Complemental strand, 4314699 - 4314429
Alignment:
| Q |
87 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
186 |
Q |
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| T |
4314699 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
4314600 |
T |
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| Q |
187 |
ttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaa |
286 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4314599 |
ttgcttgtatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaaatcatgcatgcctttctccaaa |
4314500 |
T |
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| Q |
287 |
agaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctt |
357 |
Q |
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| T |
4314499 |
agaatacactgagaatatggatcttcaaataattggcaaagagattgctagaaaatgtaagggattgcctt |
4314429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 87 - 357
Target Start/End: Complemental strand, 4305837 - 4305567
Alignment:
| Q |
87 |
gtttggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaag |
186 |
Q |
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| T |
4305837 |
gtttggactgaggattatgatgcttggaaatcccttttaaggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaag |
4305738 |
T |
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| Q |
187 |
ttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaa |
286 |
Q |
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| T |
4305737 |
ttgcttctatgctacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtgtttgaaaaccatgcatgcctttctctaaa |
4305638 |
T |
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| Q |
287 |
agaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctt |
357 |
Q |
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| T |
4305637 |
acactccattgagaaaatggaactccaaaaaattggcaaagagattattagaaaatgtcaaggattgcctt |
4305567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 90 - 357
Target Start/End: Original strand, 4253789 - 4254057
Alignment:
| Q |
90 |
tggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttg |
189 |
Q |
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| T |
4253789 |
tggaccgaggattatgacagctggaattctcttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttg |
4253888 |
T |
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| Q |
190 |
cttctatggtacaaacttttcaaggttact-ctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaag |
288 |
Q |
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| T |
4253889 |
cttctatggtccaaacttttcaaggttaattctcttgatgaattatctgatgaagattgttggtcggtgtttgcaaaccatgcatgcctttctccagaag |
4253988 |
T |
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| Q |
289 |
aatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctt |
357 |
Q |
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| T |
4253989 |
aaaccactgagaacatggatctccaaaaaattggcaaagagattgttagaaaatgtaagggattgcctt |
4254057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 149 - 352
Target Start/End: Original strand, 4246730 - 4246933
Alignment:
| Q |
149 |
gggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgt |
248 |
Q |
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| T |
4246730 |
gggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatggtccaaacttttcaaggttattctcttgagaaattgtctgatgaagattgt |
4246829 |
T |
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| Q |
249 |
tggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagg |
348 |
Q |
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| T |
4246830 |
tggtcagtgtttgcaatccatgcatgcctttcacccgaacaatccaccgagaagacggatctccaaaaaactggtagagagattgttagaaaatgtaagg |
4246929 |
T |
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| Q |
349 |
gatt |
352 |
Q |
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|||| |
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| T |
4246930 |
gatt |
4246933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 90 - 357
Target Start/End: Original strand, 41933233 - 41933500
Alignment:
| Q |
90 |
tggaccgaggattatgacgcttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttg |
189 |
Q |
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||||||||||||||||| ||||||||||| |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
41933233 |
tggaccgaggattatgatgcttggaattctcttttaaggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttg |
41933332 |
T |
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| Q |
190 |
cttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaaga |
289 |
Q |
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| T |
41933333 |
cttctatggtacaaacttttcaaggttactctcttgagcaattgtctgaagaagattgttggtccgtgtttgcaaaccatgcctgtcttcctccagaaga |
41933432 |
T |
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| Q |
290 |
atacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctt |
357 |
Q |
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|| | |||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||| |
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| T |
41933433 |
atcctttgagaaaatggatctccaaaaaattggcaaagagattgttagaaaatgtcagggattgcctt |
41933500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 350
Target Start/End: Complemental strand, 34802712 - 34802512
Alignment:
| Q |
150 |
ggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgtt |
249 |
Q |
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|||||||||||||||||||||||| | | | |||| |||||| ||||||| |||||||||||| |||| |||| || |||||||||||||||||||| |
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| T |
34802712 |
ggaagtaaaattcttgtaacaacctgtattgaaaatgttgctactatggtccaaacttttcaaccttaccatcttaagatattgtctgatgaagattgtt |
34802613 |
T |
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| Q |
250 |
ggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaaggg |
349 |
Q |
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| T |
34802612 |
ggtcagttttcgcaaaccatgcatgtctttctccagaaaaatcttctgagaatatggatatccaaaaatacgccaaggagattgttagaaaatgcaaggg |
34802513 |
T |
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| Q |
350 |
a |
350 |
Q |
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| T |
34802512 |
a |
34802512 |
T |
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