View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_16 (Length: 332)
Name: NF0952_low_16
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 50 - 324
Target Start/End: Complemental strand, 40031284 - 40031010
Alignment:
| Q |
50 |
ctcagcaagattaattacatagagaaatctctaaacacatatgattccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaa |
149 |
Q |
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| T |
40031284 |
ctcagcaagattaattacatagagaaatctctaaacacacatgattccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaa |
40031185 |
T |
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| Q |
150 |
atatctaattttagcattagtataatgaactcctaaaggctgaataaagccatagcgagactgtacagtgatgttcatatgtcaaaagcatgagggaaaa |
249 |
Q |
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| T |
40031184 |
atatctaattttagcattagtataatgaactcctaaaggctgaataaagccatagcgagactgtacagtgatgttcatatgtcaaaagcatgagggaaaa |
40031085 |
T |
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| Q |
250 |
ttatattttcaacttaccatttgtgtggaaacattaacaaatttaagaaaactagaattgtggtttagtattatc |
324 |
Q |
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| T |
40031084 |
ttatattttcaacttaccatttgtgtggaaacattaacaaatttaagaaaactagaattgtggtttagtattatc |
40031010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 40036531 - 40036414
Alignment:
| Q |
93 |
attccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaaatatctaattttagcattagtataatgaactcctaaaggctga |
192 |
Q |
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||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
40036531 |
attccaaactcaaagcacatttacaagtaccacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactga |
40036432 |
T |
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| Q |
193 |
ataaagccatagcgagac |
210 |
Q |
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| T |
40036431 |
ataaaaccatagcaagac |
40036414 |
T |
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