View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0952_low_18 (Length: 328)
Name: NF0952_low_18
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_18 |
 | |
|
| [»] scaffold0191 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 60 - 316
Target Start/End: Complemental strand, 37570000 - 37569744
Alignment:
| Q |
60 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaattcgtgagtggtgcatccttaccaccactaacactaccac |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37570000 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagcgaattcgtgagtggtgcatccttaccaccactaacactaccac |
37569901 |
T |
|
| Q |
160 |
tatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactcatctttttacgactatccataag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37569900 |
tatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactcatctttttacaactatccataag |
37569801 |
T |
|
| Q |
260 |
ctgcaaatcaggcaattcttcatcaaaagcatcnnnnnnnctagcattctgagtctg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37569800 |
ctgcaaatcaggcaattcttcatcaaaagcatcaaaaaaactagcattctgagtctg |
37569744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 291
Target Start/End: Complemental strand, 37570219 - 37570084
Alignment:
| Q |
156 |
ccactatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactcatctttttacgactatcca |
255 |
Q |
| |
|
|||||||| ||||| ||| |||| ||||| |||| | | |||||||||||||||||||||||||||||| || | ||||||| |||||| |||||||| |
|
|
| T |
37570219 |
ccactatctggttgcacaaatttactctcaaaaccattcttcaacctaccaactaaaggactttgaaacgaagcggaactcatcattttacaactatcca |
37570120 |
T |
|
| Q |
256 |
taagctgcaaatcaggcaattcttcatcaaaagcat |
291 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||| |
|
|
| T |
37570119 |
taagctgtacatgaggcaattcttcatcaaaagcat |
37570084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 37569451 - 37569388
Alignment:
| Q |
60 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaattcg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37569451 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagcgaattcg |
37569388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 37569684 - 37569580
Alignment:
| Q |
142 |
caccactaacactaccactatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactcatctt |
241 |
Q |
| |
|
|||||||| ||||||| |||| ||||| ||| |||||||||| |||| | | ||| |||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
37569684 |
caccactacgactaccagtatctggttgcacaattttattctcaaaaccatttttcaatctactaactaaaggactttgaaatgacgcagcactcgtctt |
37569585 |
T |
|
| Q |
242 |
tttac |
246 |
Q |
| |
|
||||| |
|
|
| T |
37569584 |
tttac |
37569580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 30257 - 30318
Alignment:
| Q |
60 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaatt |
121 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
30257 |
ctaacaagaccattagaagatagagtaacttttcttcctgaagctgtcttgaaaagagaatt |
30318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 29942 - 30032
Alignment:
| Q |
201 |
ctaccaactaaaggactttgaaacgacgcagcactcatctttttacgactatccataagctgcaaatcaggcaattcttcatcaaaagcat |
291 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| || |||||| ||| | |||| ||| |||| || ||||||| |||||||||| |
|
|
| T |
29942 |
ctaccaactaaaggactttgaaatgacgcggcactcgtcattttacaacttttcatacactgtaaatggggtgattcttcttcaaaagcat |
30032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University