View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_22 (Length: 306)
Name: NF0952_low_22
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 52145415 - 52145614
Alignment:
| Q |
31 |
aatatgagaatggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataacttagtt |
130 |
Q |
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| T |
52145415 |
aatatgagaatggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataacttagtt |
52145514 |
T |
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| Q |
131 |
ccttcatcttcgtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgttt |
230 |
Q |
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| T |
52145515 |
ccttcatcttcgtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgttt |
52145614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 52142021 - 52142078
Alignment:
| Q |
155 |
tcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggttta |
212 |
Q |
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| T |
52142021 |
tcattctgggtaaggaatcctgaaatttcagttgacgagctttgagctcttgggttta |
52142078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 17522563 - 17522491
Alignment:
| Q |
158 |
ttctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgttt |
230 |
Q |
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| T |
17522563 |
ttctgagtaaggaatcctgcgatttcagttgacgagctttgagctcttgggtttaagagaacatccttcgttt |
17522491 |
T |
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