View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_25 (Length: 255)
Name: NF0952_low_25
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 38774738 - 38774562
Alignment:
| Q |
59 |
tgtgcgatatagccgc-ttttcggcttagttgtgaataagttgactttggtggcgacaatgtgtgatttaggttggggggaaggcggggcggcttgatag |
157 |
Q |
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| T |
38774738 |
tgtgcgatatagccgccttttcggcttagttgtgaataagttgactttggtggcgacaatgtgtgatttaggttggggggaaggcggggcagcttgatag |
38774639 |
T |
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| Q |
158 |
tgtcgccgtcggctatggacatatgatgaggattttttagtagagtgtatgattttacttcttgatatatgtgtgca |
234 |
Q |
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| T |
38774638 |
tgtcgccgtcggttatgggcataagatgaggatttgttagtagagtgtatgattttacttcttgatatacgtgtgca |
38774562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 5342961 - 5343047
Alignment:
| Q |
61 |
tgcgatatagccgc-ttttcggcttagttgtgaataagttgactttggtggcgacaatgtgtgatttaggttggggggaaggcgggg |
146 |
Q |
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| T |
5342961 |
tgcggtatagccgcctttttgacttagttgtgaataagtcgatttcagtggcggcaatgtgtgatttaggttgggaggagggcgggg |
5343047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 40415750 - 40415683
Alignment:
| Q |
74 |
cttttcggcttagttgtgaataagttgactttggtggcgacaatgtgtgatttaggttggggggaagg |
141 |
Q |
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| T |
40415750 |
cttttcgacttagcggtgaataagtcgattttggtggaggcaatatgtgatttaggttgggaggaagg |
40415683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 30626720 - 30626651
Alignment:
| Q |
74 |
cttttcggcttagttgtgaataagttgactttggtggcgacaatgtgtgatttaggttggggggaaggcg |
143 |
Q |
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| T |
30626720 |
cttttcgacttagttgtgaataagtcgattttggtggcggcaatgtgtgatttaggctgggagaaaggcg |
30626651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 20004299 - 20004260
Alignment:
| Q |
114 |
caatgtgtgatttaggttggggggaaggcggggcggcttg |
153 |
Q |
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| T |
20004299 |
caatgtgtgatttaggttgggaggaaggcggggcagcttg |
20004260 |
T |
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