View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0952_low_26 (Length: 252)

Name: NF0952_low_26
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0952_low_26
NF0952_low_26
[»] chr3 (6 HSPs)
chr3 (1-223)||(7102995-7103217)
chr3 (59-194)||(7127123-7127258)
chr3 (56-108)||(13493205-13493257)
chr3 (57-108)||(6561411-6561462)
chr3 (56-105)||(7119980-7120029)
chr3 (58-115)||(13460832-13460889)
[»] chr8 (4 HSPs)
chr8 (56-108)||(27700742-27700794)
chr8 (59-87)||(26292024-26292052)
chr8 (59-87)||(26305281-26305309)
chr8 (59-87)||(26338636-26338664)
[»] chr6 (1 HSPs)
chr6 (50-105)||(33839151-33839206)
[»] chr5 (2 HSPs)
chr5 (56-106)||(7023077-7023127)
chr5 (62-108)||(28092136-28092182)
[»] scaffold0438 (1 HSPs)
scaffold0438 (59-87)||(6406-6434)
[»] chr4 (1 HSPs)
chr4 (56-104)||(36590357-36590405)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7102995 - 7103217
Alignment:
Q  1 caatttatctttcaaaattaaaaggcagatttcaccttttgaataattaacttgggctgaaggtgagttttgaagcaaaaagtcaattattccctcaggt 100  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7102995 caatttatctttcaaaattaaaaggaagatctcaccttttgaataattaacttgggctgaaggtgagttttgaagcaaaaagtcaattattccctcaggt 7103094  T
Q  101 atggatgatgatccttttttgaaggcttctcgtaacgtggcaacttctttctgtgacatggcaggatttagagctaatttggcatctatgagtgcgttgg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7103095 atggatgatgatctttttttgaaggcttctcgtaacgtggcaacttctttctgtgacatggcaggatttagagctaatttggaatctatgagtgcgttgg 7103194  T
Q  201 aaaagcaatatgaaagttgtttc 223  Q
    |||||||||||||||||||||||    
T  7103195 aaaagcaatatgaaagttgtttc 7103217  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 7127258 - 7127123
Alignment:
Q  59 gaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggatgatgatccttttttgaaggcttctcgtaacgtggcaacttctttctgtgaca 158  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||| ||| || ||||||| |||| ||||| ||||||  ||||||     
T  7127258 gaaggtgagttttgaagcaaaaagtaaactattccatcaggtatggatgaagatccttctttaaatgcttctcttaacttggcagcttcttcttgtgacc 7127159  T
Q  159 tggcaggatttagagctaatttggcatctatgagtg 194  Q
     ||||||     ||||||||||||||||||| ||||    
T  7127158 cggcaggcaactgagctaatttggcatctatcagtg 7127123  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 13493257 - 13493205
Alignment:
Q  56 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggatga 108  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  13493257 gctgaaggtgagttttgaagcaaaaattcaagtattccctcaggtatggatga 13493205  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 6561411 - 6561462
Alignment:
Q  57 ctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggatga 108  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  6561411 ctgaaggtgagttttgaagcataaagtcaagtattccctcaggtatggatga 6561462  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 7120029 - 7119980
Alignment:
Q  56 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatgga 105  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  7120029 gctgaaggtgagttttgaagcaaaaagtcgactattccatcaggtatgga 7119980  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 13460889 - 13460832
Alignment:
Q  58 tgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggatgatgatcct 115  Q
    ||||| |||||||||||||||||| | ||| ||| | |||||||||||||| ||||||    
T  13460889 tgaagttgagttttgaagcaaaaaattaatcatttcatcaggtatggatgacgatcct 13460832  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 27700742 - 27700794
Alignment:
Q  56 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggatga 108  Q
    |||||||| |||||||||||||||||||||| ||| || |||||||| |||||    
T  27700742 gctgaaggcgagttttgaagcaaaaagtcaactataccatcaggtatagatga 27700794  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 26292052 - 26292024
Alignment:
Q  59 gaaggtgagttttgaagcaaaaagtcaat 87  Q
    |||||||||||||||||||||||||||||    
T  26292052 gaaggtgagttttgaagcaaaaagtcaat 26292024  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 26305309 - 26305281
Alignment:
Q  59 gaaggtgagttttgaagcaaaaagtcaat 87  Q
    |||||||||||||||||||||||||||||    
T  26305309 gaaggtgagttttgaagcaaaaagtcaat 26305281  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 26338664 - 26338636
Alignment:
Q  59 gaaggtgagttttgaagcaaaaagtcaat 87  Q
    |||||||||||||||||||||||||||||    
T  26338664 gaaggtgagttttgaagcaaaaagtcaat 26338636  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 33839151 - 33839206
Alignment:
Q  50 acttgggctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatgga 105  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||| |||||||||||    
T  33839151 actttggctgacggtgagttttgaagcaagaagtccactattccatcaggtatgga 33839206  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 7023127 - 7023077
Alignment:
Q  56 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatggat 106  Q
    ||||| ||||| ||| ||||||||||||||| |||||| ||||||||||||    
T  7023127 gctgagggtgactttcgaagcaaaaagtcaactattccatcaggtatggat 7023077  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 28092182 - 28092136
Alignment:
Q  62 ggtgagttttgaagcaaaaagtcaattattccctcaggtatggatga 108  Q
    ||||||||||||| ||||||||| | |||||| ||||||||||||||    
T  28092182 ggtgagttttgaatcaaaaagtccactattccatcaggtatggatga 28092136  T

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Target: scaffold0438 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 6434 - 6406
Alignment:
Q  59 gaaggtgagttttgaagcaaaaagtcaat 87  Q
    |||||||||||||||||||||||||||||    
T  6434 gaaggtgagttttgaagcaaaaagtcaat 6406  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 36590357 - 36590405
Alignment:
Q  56 gctgaaggtgagttttgaagcaaaaagtcaattattccctcaggtatgg 104  Q
    ||||| ||||||||||||| ||||||||| | |||||| ||||||||||    
T  36590357 gctgacggtgagttttgaatcaaaaagtccactattccatcaggtatgg 36590405  T

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