View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_27 (Length: 251)
Name: NF0952_low_27
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 41571178 - 41570940
Alignment:
| Q |
13 |
aatatgatgagactgcacttatatttccagtaaactgattatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttttcc |
112 |
Q |
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| T |
41571178 |
aatatgatgagactgcacttatatttccagtaaactgattatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttttcc |
41571079 |
T |
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| Q |
113 |
acttagtaaattgttatttaatagtaaataacctaagttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaatcaaag |
212 |
Q |
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| T |
41571078 |
acttagtaaattgttatttaatagtaaataacctaagttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaatcaaag |
41570979 |
T |
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| Q |
213 |
taatcaagttgagacaagttaaacaatgatggcgggatt |
251 |
Q |
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| T |
41570978 |
taatcaagttgagacaagttaaacaatgatggcgggatt |
41570940 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 30019883 - 30019982
Alignment:
| Q |
16 |
atgatgagactgcacttatatttccagtaaactgattatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttttccact |
115 |
Q |
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| T |
30019883 |
atgatgagattgcacttctatttcttgtaaatttatt--ttgatagatccaatcttgtcatagatggtaaatataaacatcatgaagaaatttttccact |
30019980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 11119142 - 11119235
Alignment:
| Q |
150 |
ttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaatcaaagtaatcaagttgagacaagttaaacaatgatg |
243 |
Q |
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| T |
11119142 |
ttttggaaccctgtaattttgttgggcaggggaccatctaatttattattagaacaacctaatgcaacaagttgagtcaagttaaataatgatg |
11119235 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 25522053 - 25521996
Alignment:
| Q |
150 |
ttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaat |
207 |
Q |
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| T |
25522053 |
ttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaacaat |
25521996 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 8524118 - 8524193
Alignment:
| Q |
166 |
ttttgttgggtagaggaccctttaatttattataagaacaatc-aaagtaatcaagttgagacaagttaaacaatga |
241 |
Q |
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| T |
8524118 |
ttttgttgggtaagggaccatctaatttattatgagaacaatctaaagtaa-caagatgagtcaagttaaataatga |
8524193 |
T |
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