View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_28 (Length: 251)
Name: NF0952_low_28
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_28 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 41570736 - 41570958
Alignment:
| Q |
29 |
atttcccgaatcaaatagatttcaagaactagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaacatctcgttaat |
128 |
Q |
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| T |
41570736 |
atttcccgaatcaaatagatttcaagaactagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaacatctcgttaat |
41570835 |
T |
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| Q |
129 |
ttagacctgtcatccaattcattcagtggtcaaattccagacgtgttttacaaactaaccaaattacaagaactccgtctagataataatagactagacg |
228 |
Q |
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| T |
41570836 |
ttagacctgtcatccaattcattcagtggtcaaattccagacgtgttttacaaactaaccaaattacaagaactccgtctagataataatagactagacg |
41570935 |
T |
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| Q |
229 |
gacaaatcccgccatcattgttt |
251 |
Q |
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| T |
41570936 |
gacaaatcccgccatcattgttt |
41570958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 169
Target Start/End: Original strand, 34231560 - 34231671
Alignment:
| Q |
58 |
tagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaacatctcgttaatttagacctgtcatccaattcattcagtgg |
157 |
Q |
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| T |
34231560 |
tagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcgg |
34231659 |
T |
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| Q |
158 |
tcaaattccaga |
169 |
Q |
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| T |
34231660 |
tcaaattccaga |
34231671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 42124868 - 42124792
Alignment:
| Q |
38 |
atcaaatagatttcaagaactagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttc |
114 |
Q |
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| T |
42124868 |
atcaaacaaatttcaagaattagatttgagaggtaacaaaattgaaggtgagctgccaacatcactttcaaaccttc |
42124792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 42118378 - 42118314
Alignment:
| Q |
99 |
tcactttcaaaccttcaacatctcgttaatttagacctgtcatccaattcattcagtggtcaaat |
163 |
Q |
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| T |
42118378 |
tcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatttagtggtcaaat |
42118314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 25521812 - 25521894
Alignment:
| Q |
93 |
ccaacatcactttcaaaccttcaacatctcgttaatttagacctgtcatccaattcattcagtggtcaaattccagacgtgtt |
175 |
Q |
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| T |
25521812 |
ccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagacgtgtt |
25521894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 8524316 - 8524250
Alignment:
| Q |
48 |
tttcaagaactagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttc |
114 |
Q |
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| T |
8524316 |
tttcaagaattagttttgagtaataacaaaattgaaggtgagcttccaacatcactatcaaaccttc |
8524250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 11119645 - 11119574
Alignment:
| Q |
47 |
atttcaagaactagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaaca |
118 |
Q |
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| T |
11119645 |
atttcaaaaattagatttgagtcataacaaaattgaaggtgtggttccaacatcaatttcaaaccttcaaca |
11119574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 15590791 - 15590744
Alignment:
| Q |
58 |
tagatttgagcggtaacaaaattggaggtgatcttccaacatcacttt |
105 |
Q |
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| T |
15590791 |
tagatttgagtggtaacaaaattgaaggtgagctgccaacatcacttt |
15590744 |
T |
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