View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_29 (Length: 251)
Name: NF0952_low_29
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 4580367 - 4580553
Alignment:
| Q |
1 |
cttcataagaaaatgctgaaactgaaacccatgttctggatgtgcttgattcttgtgttcctctcattatcttgtcgtgaatctcgtcctcttggaaccc |
100 |
Q |
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| T |
4580367 |
cttcataagaaaatgctgaaactgaaacccatgttctggatgtgcttgattcttgtattcctctcattatcttgtcgtgaatctcgtcctcttggaaccc |
4580466 |
T |
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| Q |
101 |
caaggagtatgaagagcaatgaagctagagattcacattttggtgaccatgttgcaagtctcaggagatcgttgtcagaaatacatg |
187 |
Q |
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| T |
4580467 |
caaggagtatgaagagcaatgaagctagagattcacattttggtgaccatgttgcaagtctcaggagatcgttgtcagaaatacatg |
4580553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 4580917 - 4580959
Alignment:
| Q |
180 |
aatacatgaaagccctcgtttaccaggaagacttagtcctgaa |
222 |
Q |
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| T |
4580917 |
aatacatgaaagccctcgtttaccaggaagacttagtcctgaa |
4580959 |
T |
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