View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_3 (Length: 458)
Name: NF0952_low_3
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 46874932 - 46875315
Alignment:
| Q |
1 |
cttgacttttacaattttgaggactaaaatgtcgatttacttnnnnnnntatgtgaacactctttcaggcaacttctaaagtataaactcttgcaagccc |
100 |
Q |
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| T |
46874932 |
cttgacttttacaattttgaggactaaaatgtcgatttacttaaaaaaatatgtgaacgctctttcagacaacttctaaagtataaactcttgcaagccc |
46875031 |
T |
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| Q |
101 |
aatgtttgatataagctcctgccagcccaaatgatctttgatacgtaaaagattactctatgcacccggtggattgctcaacctctgaaataaaccgatt |
200 |
Q |
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| T |
46875032 |
aatgtttgatataagctcctgccagcccaaatgatctttgatacgtaaaagattactctatgcacccggtggattgctcaacctctgaaataaaccgatt |
46875131 |
T |
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| Q |
201 |
caatatgctcctgtccaaaaacaacgactggatcgtagctcctgataggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagca |
300 |
Q |
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| T |
46875132 |
caatatgctcctgtccaaaaacaacgactggatcgtagctcctgataggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagca |
46875231 |
T |
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| Q |
301 |
aattgaagggtctgcaaagcaaatctcatattggcaagaaaatctaatgtatcccatgagcaggagtaggatgtacctttgttt |
384 |
Q |
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| T |
46875232 |
aattgaagggtctgcaaagcaaatctcatattggcaagaaaatctaatgtatcccatgagcaggagtaggatgtacctttgttt |
46875315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 23895211 - 23895174
Alignment:
| Q |
156 |
ctctatgcacccggtggattgctcaacctctgaaataa |
193 |
Q |
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| T |
23895211 |
ctctatgcaccccgtggattgctcaacctctgaaataa |
23895174 |
T |
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