View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_34 (Length: 202)
Name: NF0952_low_34
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 4e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21993168 - 21993274
Alignment:
| Q |
1 |
ttccacggagccaaaggaggaaactttgccatagtttcagacgacgaattccaaatcaacgcacacttcatcggtactcgacctcagggaaggactcgcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
21993168 |
ttccacggagccaaaggaggaaactttgccatagtttcagacgacgaattccaaatcaatgcacacttcatcggtactcggcctcagggaaggactcgcg |
21993267 |
T |
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| Q |
101 |
actacac |
107 |
Q |
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||||||| |
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| T |
21993268 |
actacac |
21993274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22010387 - 22010487
Alignment:
| Q |
1 |
ttccacggagccaaaggaggaaactttgccatagtttcagacgacgaattccaaatcaacgcacacttcatcggtactcgacctcagggaaggactcgcg |
100 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22010387 |
ttccatggagccaaaggaggaaacttcgccatagtttcagacgatgatttccaaatcaatgcacacttcatcggtactcgacctcagggaaggactcgcg |
22010486 |
T |
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| Q |
101 |
a |
101 |
Q |
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| |
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| T |
22010487 |
a |
22010487 |
T |
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