View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_4 (Length: 440)
Name: NF0952_low_4
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 32 - 413
Target Start/End: Original strand, 16233688 - 16234075
Alignment:
| Q |
32 |
tagcaatggagtttaaataatatgtatggattgctaccatctaatttgtgctgccttttcagttagttttcaaatgt-----acgaagaaaatgattctc |
126 |
Q |
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| T |
16233688 |
tagcaatggagtttaaataatatgtatggattgctagcatctaatttgtgctgccttttcagttagttttcaaatatggattacgaagaaaatgattctc |
16233787 |
T |
|
| Q |
127 |
agaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttgtctgatcctagaggctt |
226 |
Q |
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| T |
16233788 |
agaagaaaatcaaaataggggaagccgataaagattccatccataacttagcaagactaccaacaaaagtaagctgggttttgtctgatcctagaggctt |
16233887 |
T |
|
| Q |
227 |
ctggaaccctatactcgatgattctattgtaccggcatc-ataaaagaggaaatggtcccaagcattttcaatatccattaatgaaggagcttctagtgg |
325 |
Q |
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| T |
16233888 |
ctggaaccctatcctcgatgattctattgtaccggcatctggaaaagaggaaatggtcccaagcattttcaatatccatcaatgaaggagctacttgtgg |
16233987 |
T |
|
| Q |
326 |
agttaataattgaggtaagcttgaacctagttaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttattg |
413 |
Q |
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| T |
16233988 |
agttaataattgaggtaagcttgaacctagttaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttattg |
16234075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 112 - 412
Target Start/End: Complemental strand, 41223246 - 41222946
Alignment:
| Q |
112 |
aagaaaatgattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttgtc |
211 |
Q |
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| T |
41223246 |
aagaaaatgattctcagaagaaaatcaaaataggggaagacgatagaggttccatccataacttagcaagaccaccaacaaaagtgagctgggttttgtc |
41223147 |
T |
|
| Q |
212 |
tgatcctagaggcttctggaaccctatactcgatgattctattgtaccggcatcataaaagaggaaatggtcccaagcattttcaatatccattaatgaa |
311 |
Q |
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| T |
41223146 |
tgatcctagaggcttctggaaccctttcctcgatgattctgttgtaccggcatctgaaaagaggaaatggtccgaagcattttcaatatccatcaatgaa |
41223047 |
T |
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| Q |
312 |
ggagcttctagtggagttaataattgaggtaagcttgaacctagttaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttat |
411 |
Q |
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| T |
41223046 |
ggagctactagtggagttaataattgaggtaagcttgaacctagttaaatatgtttgaatgtaatttgatgccttcagaagcaccgatgtcacttgttat |
41222947 |
T |
|
| Q |
412 |
t |
412 |
Q |
| |
|
| |
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|
| T |
41222946 |
t |
41222946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 315
Target Start/End: Complemental strand, 41217458 - 41217262
Alignment:
| Q |
120 |
gattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttgtctgatccta |
219 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |
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| T |
41217458 |
gattctcagaagaaaatcaaaacgggggaagacgacggaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctg |
41217359 |
T |
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| Q |
220 |
gaggcttctggaaccctatactcgatgattctattgtaccggcatcataaaagaggaaatggtcccaagca-ttttcaatatccattaatgaaggag |
315 |
Q |
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| T |
41217358 |
gtggcttctggagccctttcctagatgattctattgtaccaacatctgaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaaggag |
41217262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 41223341 - 41223284
Alignment:
| Q |
51 |
atatgtatggattgctaccatctaatttgtgctgccttttcagttagttttcaaatgt |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41223341 |
atatgtatggattgctactatctaatttgtgctgccttttcagttagttttcaaatgt |
41223284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 108 - 375
Target Start/End: Original strand, 1598403 - 1598676
Alignment:
| Q |
108 |
tacgaagaaaatgattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttt |
207 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
1598403 |
tacgaaaaaaatgattctcagaagaaaatcaaaacgggggaagacgatagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttt |
1598502 |
T |
|
| Q |
208 |
tgtctgatcctagaggcttctggaaccctatactcgatgattctattgtaccggcatcataaaagaggaaatggtcccaagcattttcaatatccattaa |
307 |
Q |
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||||| ||| ||||||||||||||| | || ||||||| ||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| || |
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| T |
1598503 |
tgtctagtcccgagggcttctggaaccctttcctagatgattatattgtaccagcatctgaaaagaggaaatggtccgaagcattttcgatatccatcaa |
1598602 |
T |
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| Q |
308 |
t------gaaggagcttctagtggagttaataattgaggtaagcttgaacctagttaaatatgtttgaatgtaa |
375 |
Q |
| |
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| ||||||||| ||||||||||| ||| ||||||||| ||| |||| |||||||||||||||||||| |
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| T |
1598603 |
tgaattcgaaggagctactagtggagtttatagttgaggtaatcttaaaccacattaaatatgtttgaatgtaa |
1598676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 1294819 - 1294713
Alignment:
| Q |
279 |
tggtcccaagcattttcaatatccattaatgaaggagcttctagtggagttaataattgaggtaagcttgaacctagttaaatatgtttgaatgtaattt |
378 |
Q |
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|||||| |||||||||||| |||| |||||||||||| || ||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1294819 |
tggtccgaagcattttcaa---ccatcaatgaaggagctactgatggagtttagagttgaggtaagcttgaaccaagttaaatatgtttgaatgtaattt |
1294723 |
T |
|
| Q |
379 |
gatgccttca |
388 |
Q |
| |
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|||||||||| |
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| T |
1294722 |
gatgccttca |
1294713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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