View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_5 (Length: 439)
Name: NF0952_low_5
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 376
Target Start/End: Complemental strand, 16011708 - 16011356
Alignment:
| Q |
24 |
tcatcagggaaaactttggatgaagctaggaagttaattgagcaaagttttggaaattatgttagtagcagtgttatgctggctgctaaagaggaactta |
123 |
Q |
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| T |
16011708 |
tcatcagggaaaactttggatgaagctaggaagttaattgagcaaagttttggaaattatgttagtagcagtgttatgctggctgctaaagaggaactta |
16011609 |
T |
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| Q |
124 |
atagaattgaaaaagaaattcagttgttgatgtcagaaatcactgatgaagccatagatagaaaaagtaggaaggctttatcacagcgacaatacaagga |
223 |
Q |
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| T |
16011608 |
atagaattgaaaaagaaattcagttgttgatgtcagaaatcactgatgaagccatagatagaaaaagtaggaaggctttatcacagcgacaatacaagga |
16011509 |
T |
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| Q |
224 |
gattgcagaattacaggaaaatttaagggcagagaaacgtattagggctgaattgcgaagacagaaggaagcaaagagaatatccgccttgaaaccatta |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
16011508 |
gattgcagaattacaggaaaatttaagggcagagaaacgtattagggctgaattgcgaagacaaaaggaaacaaagagaatatccgccttgaaaccatta |
16011409 |
T |
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| Q |
324 |
ttagaagagtccgaaaatttaccatttttgtgcttgcagtatagagattctga |
376 |
Q |
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| T |
16011408 |
ttagaagagtccgaaaatttaccatttttgtgcttgcagtatagagattctga |
16011356 |
T |
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