View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_low_7 (Length: 417)
Name: NF0952_low_7
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 75 - 234
Target Start/End: Original strand, 1560685 - 1560843
Alignment:
| Q |
75 |
cttgaccttaacctttaattggaaactagaccgacacccaaccactaataagttccaatggcttctcctgaaaggattccacggggccgtgacataagtg |
174 |
Q |
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| T |
1560685 |
cttgaccttaacctttaattggaaactagaccgacacccaaccactaataagttccaatggcttctcccgaaaggattccac-ggaccatgacataagtg |
1560783 |
T |
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| Q |
175 |
cgaacgaacctaaggagaaacgccaaagaaacgcataacacagagcaaagatgaacaacc |
234 |
Q |
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| T |
1560784 |
cgaacgaacctaaggagaaacaccaaagaagcccataacacagagcaaagatgaacaacc |
1560843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1560611 - 1560650
Alignment:
| Q |
1 |
ttttccactacttttcaatcaagactttaacaaatacatg |
40 |
Q |
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| T |
1560611 |
ttttccactacttttccatcaagactttaacaaatacatg |
1560650 |
T |
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