View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0952_low_9 (Length: 391)

Name: NF0952_low_9
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0952_low_9
NF0952_low_9
[»] chr1 (3 HSPs)
chr1 (131-363)||(36184068-36184302)
chr1 (131-363)||(50036912-50037141)
chr1 (90-121)||(36184015-36184046)
[»] chr6 (2 HSPs)
chr6 (322-363)||(14011809-14011850)
chr6 (322-363)||(17597033-17597074)
[»] chr2 (1 HSPs)
chr2 (322-363)||(14456593-14456634)
[»] chr4 (1 HSPs)
chr4 (90-121)||(48578053-48578084)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 131 - 363
Target Start/End: Original strand, 36184068 - 36184302
Alignment:
Q  131 caattcacaattaaatcaattcttcgtttctgcaatcaattcttctttaacagtttgggatgtgcctccgttgccagccgtgcctttctggt-ttgatgc 229  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||| |||    
T  36184068 caattcacaattaaatcaattcttcgtttctgcaatcaatttttctttaacagtttgggatgtgcctctgttgccagccgtgcctttttggtcttgctgc 36184167  T
Q  230 tagagccggttttggcttgttgtaattctgttgttttaagctttaagcatctcctgtgctaaccgctttattaatatatgatgctt-aacaaaaaatcca 328  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||    
T  36184168 tatagccggttttggcttgttgtaattatgttgttttaagctttaagcatctcctgtgctagccgctttattaatatatgatgcttaaaaaaaaaatcca 36184267  T
Q  329 aaaatttcatgaacatgaatatgatgatgataatt 363  Q
    |||||||||||||||||||||||||||||||||||    
T  36184268 aaaatttcatgaacatgaatatgatgatgataatt 36184302  T

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Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 131 - 363
Target Start/End: Complemental strand, 50037141 - 50036912
Alignment:
Q  131 caattcacaattaaatcaattcttcgtttctgcaatcaattcttctttaacagtttgggatgtgcctccgttgccagccgtgcctttctggt-ttgatgc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||    
T  50037141 caattcacaattaaatcaattcttcgtttctgcaatcaattcttctttaacagtttgggatgtgcctctgttgccagccgtgcctttctggtcttgctgc 50037042  T
Q  230 tagagccggttttggcttgttgtaattctgttgttttaagctttaagcatctcctgtgctaaccgctttattaatatatgatgctt-aacaaaaaatcca 328  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||     | ||||| |||||||||||||||||||||||| || ||||||||||    
T  50037041 tagagtcggttttggcttgttgtaattctgttgttttaagctttaagca-----tttgctagccgctttattaatatatgatgcttaaaaaaaaaatcca 50036947  T
Q  329 aaaatttcatgaacatgaatatgatgatgataatt 363  Q
    |||||||||||||||||||||||||||||||||||    
T  50036946 aaaatttcatgaacatgaatatgatgatgataatt 50036912  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 121
Target Start/End: Original strand, 36184015 - 36184046
Alignment:
Q  90 atttgtgattcaaaattgaaacttagaatagg 121  Q
    ||||||||||||||||||||||||||||||||    
T  36184015 atttgtgattcaaaattgaaacttagaatagg 36184046  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 14011850 - 14011809
Alignment:
Q  322 aaatccaaaaatttcatgaacatgaatatgatgatgataatt 363  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  14011850 aaatccaaaaatttcatgaacatgaacatgatgatgataatt 14011809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 17597074 - 17597033
Alignment:
Q  322 aaatccaaaaatttcatgaacatgaatatgatgatgataatt 363  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  17597074 aaatccaaaaatttcatgaacgtgaacatgatgatgataatt 17597033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 14456634 - 14456593
Alignment:
Q  322 aaatccaaaaatttcatgaacatgaatatgatgatgataatt 363  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  14456634 aaatccaaaaatttcatgagcatgaacatgatgatgataatt 14456593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 48578084 - 48578053
Alignment:
Q  90 atttgtgattcaaaattgaaacttagaatagg 121  Q
    ||||||||||||||||||||||||||||||||    
T  48578084 atttgtgattcaaaattgaaacttagaatagg 48578053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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