View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_1 (Length: 636)
Name: NF0953_high_1
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 49 - 627
Target Start/End: Complemental strand, 25296594 - 25296016
Alignment:
| Q |
49 |
ctaacgtccaattcattcgtcggaaaattatgtccaacggtagaagtacgccatttcccgtcatctatagcgacggtgaaaccgaaaccaacctcggaat |
148 |
Q |
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| T |
25296594 |
ctaacgtccaattcattcctcggaaaattatgtccaacggtagaagtacgccatttcccgtcatctatagcgacggcgaaaccgaaaccaacctcggaat |
25296495 |
T |
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| Q |
149 |
tctaaggctgtaccccacctcagatatgaatactcttcttttcatcctcagtgaaaagatcaaaatcttggcacatctatttactgtatttcttgcgaaa |
248 |
Q |
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| T |
25296494 |
tctaaggctgtaccccacctcagatatgaatactcttcttttcatcctcagtgaaaagatcaaaatcttgccacatctatttactgtatttcttgcgaaa |
25296395 |
T |
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| Q |
249 |
caaggcagcaactggaaaattcctttctcattcaagatcaacattgccgaattcgataataaacacggcgagtactatttatatgtcaagtcttcagtga |
348 |
Q |
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| T |
25296394 |
caaggcagcaactggaaaattcctttctcattcaagatcaacattgccgaattcgataataaacacggcgagtactatttatatgtcaagtcttcagtga |
25296295 |
T |
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| Q |
349 |
agaagaacaagaacccatctcagaaattcaagcctggggctttaagtgatgaatacgttgaaaggctgagaagaggaccgataggacaaggcaaacttgg |
448 |
Q |
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| T |
25296294 |
agaagaacaagaacccatctcagaaattcaagcctggggctttaagtgatgaatacgttgaaaggctgagaagaggaccgataggacaaggcaaacttgg |
25296195 |
T |
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| Q |
449 |
tatctgtggagagtgtttcatggagaaaattacagggattgatgctgatttccatttgtgctttggtgataaggaaattttagggtttcgaacaactgcg |
548 |
Q |
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| T |
25296194 |
tatctgtggagagtgtttcatggagaaaattacagggattgatgctgatttccatttgtgctttggtgataaggaaattttagggtttcgaacaactgcg |
25296095 |
T |
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| Q |
549 |
ggtccgatttcccggccggtgagaagttccggcaagaatggtcactgatttgttcggtgcgtttcttttttatattctt |
627 |
Q |
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| T |
25296094 |
ggtccgatttcccggccggtgagaagttccggcaagaatggtcactgatttgttcggtgcgtttcttttttattttctt |
25296016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 25303773 - 25303724
Alignment:
| Q |
99 |
ccatttcccgtcatctatagcgacggtgaaaccgaaaccaacctcggaat |
148 |
Q |
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| T |
25303773 |
ccattccccgtcgtctataacgacggcgaaaccgaaaccaacctcggaat |
25303724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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