View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_high_13 (Length: 489)
Name: NF0953_high_13
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 61 - 397
Target Start/End: Complemental strand, 9394671 - 9394334
Alignment:
| Q |
61 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattctat |
160 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9394671 |
gatgaaagtttgaaggcaaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattctat |
9394572 |
T |
|
| Q |
161 |
ttcatataatgttcataaatttctgtttttgatttcttgttgaaaatttgatgttt-agggtttatttctttgattgcatgctggcaactgtgtttttat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
9394571 |
ttcatataatgttcataaatttctgtttttgatttcttgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttat |
9394472 |
T |
|
| Q |
260 |
gttattttgtttgattttatgttgagaattttctgctttagggtttattcatatgatttcgtgttgaaaattgggttttagtgtttatttcttttattgc |
359 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9394471 |
gttattttgtttgattttatgttgaaaattttcttctttagggtttattcatatgatttcgtgttgaaaattgggttttagtgtttatttcttttattgc |
9394372 |
T |
|
| Q |
360 |
atgttggaaattctgtttctattttaattatgttgaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9394371 |
atgttggaaattctgtttctattttatttatgttgaaa |
9394334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 9394314 - 9394265
Alignment:
| Q |
429 |
atggttcattggtttgaatttcatgttgaaaactgtgttttatggttcat |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9394314 |
atggttcattggtttgaatttcatgttgaaaactgtgttttatggttcat |
9394265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 9394002 - 9393947
Alignment:
| Q |
186 |
tttttgatttcttgttgaaaatttgatgtttagggtttatttctttgattgcatgct |
242 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||| || |||||||||||| |||||| |
|
|
| T |
9394002 |
tttttgatttcatgttgaaaatttggt-tttaggattcatttctttgatttcatgct |
9393947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 63 - 308
Target Start/End: Complemental strand, 1342210 - 1341951
Alignment:
| Q |
63 |
tgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattctattt |
162 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1342210 |
tgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattttattt |
1342111 |
T |
|
| Q |
163 |
catataatgttcataaatttctgtttttg--------------atttcttgttgaaaatttgatg-tttagggtttatttctttgattgcatgctggcaa |
247 |
Q |
| |
|
|| |||||| |||||||| || ||||| ||||| |||||||| |||| || ||||||||||||||||||||||||||| || || |
|
|
| T |
1342110 |
tattaaatgttgataaatttgtgcttttgttttattttactttatttcatgttgaaattttggtgttttagggtttatttctttgattgcatgttgaaaa |
1342011 |
T |
|
| Q |
248 |
ctgtgtttttatgttattttgtttgattttatgttgagaattttctgctttagggtttatt |
308 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| | |||||| | ||||||||||||| |
|
|
| T |
1342010 |
ttgtg-tattatgttattttgtttgattttatgttcaaaattttgttttttagggtttatt |
1341951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 31944183 - 31944088
Alignment:
| Q |
61 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt |
156 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31944183 |
gatgaaagtttcaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctatt |
31944088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 31943977 - 31943907
Alignment:
| Q |
214 |
tttagggtttatttctttgattgcatgctggcaactgtgtttttatgttattttgtttgattttatgttga |
284 |
Q |
| |
|
|||||| ||||||||| ||||| |||| || || | || |||||||||||||||||||||||||||||| |
|
|
| T |
31943977 |
tttaggatttatttctatgattacatgttgaaaattcggtgtttatgttattttgtttgattttatgttga |
31943907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 35535496 - 35535401
Alignment:
| Q |
61 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt |
156 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| || ||||||||| || ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35535496 |
gatgaaagtttgaaggcgtagtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaaggtttctatt |
35535401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 5644378 - 5644293
Alignment:
| Q |
71 |
tgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt |
156 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||||||||| || ||||||||||| | |||||||||||||| |||||| ||||| |
|
|
| T |
5644378 |
tgaaggcgaagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgttaaggttcctatt |
5644293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University