View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_2 (Length: 622)
Name: NF0953_high_2
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 32283501 - 32282982
Alignment:
| Q |
8 |
ccaataatatcaaatgtttcattatgtattcgacaaatggaaaattcgcaaaaagatgcttttgcttctttcttcttgatgcatgatgtaagaagtaatg |
107 |
Q |
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| T |
32283501 |
ccaataatatcaaatgtttcattatgtattcgacaaatggaaaattcgcaaagagatgcttttgcttctttcttcttgatgcatgatgtaagaagtaatg |
32283402 |
T |
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| Q |
108 |
catttcctatatagccatgcaatggtcccctcgattacacaatgcacccatttttattttaaattgttgttgcagttaccttgaagatctttataacgtg |
207 |
Q |
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| T |
32283401 |
catttcctatatagccatgcaatggcccccgcgattacacaatgcacccttttttattttaaattgttgttgcagttaccttgaagatctttataacgtg |
32283302 |
T |
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| Q |
208 |
gaaaacgagtaaaaatgcgactgatgcaagatattgaccataagaagatagcataatatgatacacataaattcattaccttttacgtgaaaactacaaa |
307 |
Q |
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| T |
32283301 |
gaaaacgagtaaaaatgcgactgatgcaagatattgaccataagaagatagcataatatgatacacataaattcattactttttacgtgaaaactacaaa |
32283202 |
T |
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| Q |
308 |
acctagacatagaattattgtccgaatggtgaaccgtggtcccaac-aaaatgacatttaaccttgaacagttgtaactacatttatgttatttttcatg |
406 |
Q |
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| T |
32283201 |
acctagacatagaattattgtccgaatggtgaaccgtggtcccaacaaaaatgacatttaaccttgtaatgttgtaactacatttatgttatttttcatg |
32283102 |
T |
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| Q |
407 |
tgagaattctttaaccaatttcaagtacataaacattgaccgtggtttaccccttgaaggttccgttggaggatttttaccttggaacatctaagaattc |
506 |
Q |
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| T |
32283101 |
tgagaattctttgaccaatttcaagtacat-aacattgaccgtggttcaccccttgaaggttccgttggaggatttttaccttggaacatctaagaattc |
32283003 |
T |
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| Q |
507 |
aaatgatgttgaatttacgaa |
527 |
Q |
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| T |
32283002 |
aaatgatgttgaatttacgaa |
32282982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 25785800 - 25785891
Alignment:
| Q |
61 |
agatgcttttgcttctttcttcttgatgc---atgatgtaagaagtaatgcatttcctatatagccatgc-aatggtcccctcgattacaca |
148 |
Q |
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| T |
25785800 |
agatgctttttcttctttcttcttgatgcttgatgatgtatgaagtaatgcacttcctctgtagccatgcaaacggtcccctcgtttacaca |
25785891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 503
Target Start/End: Original strand, 36879108 - 36879156
Alignment:
| Q |
455 |
accccttgaaggttccgttggaggatttttaccttggaacatctaagaa |
503 |
Q |
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| T |
36879108 |
accccttgaaggtatctttggaggatctttaccttgggacatctaagaa |
36879156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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