View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_21 (Length: 445)
Name: NF0953_high_21
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 39747988 - 39747742
Alignment:
| Q |
14 |
atattaagaagattcaattgaaattgtaaacnnnnnnnnttgtactatttttacaatcccttgtttttaggggaaagagatatgataatctaaagtttag |
113 |
Q |
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| T |
39747988 |
atattaagaagattcaattgaaattgtaaa-aaaaaaaattgtactattttaacaatcccttattttcaggggaatgagatatgataatctaaagtttag |
39747890 |
T |
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| Q |
114 |
tcgagaggtaattgaagtctgataaaaaattgtttcacacataaatcaaaatcttcacattgttgatgtcatgcattaaattagtctttaattaatatta |
213 |
Q |
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| T |
39747889 |
tcgagaggtaagtgaagtctaataaaaaattgtttaacacataaatcaaaatctttacattgttgatgtcatgcattaaattagtctttaattaatatta |
39747790 |
T |
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| Q |
214 |
atatgtggaaatacctaaatattcagatttaagaccaacaaacataac |
261 |
Q |
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| T |
39747789 |
atatgtggaaatacctaaatattcagatttaagaccaacaaacataac |
39747742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 39747722 - 39747659
Alignment:
| Q |
286 |
attgttgttaacatttaaaaataatctaagaaaaacaacctaagactaaattaagggtgagttg |
349 |
Q |
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| T |
39747722 |
attgttgttaacatttaaaaataatctaagaaaaacaaccttagactaaattaagggtgagttg |
39747659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 41932077 - 41932045
Alignment:
| Q |
131 |
tctgataaaaaattgtttcacacataaatcaaa |
163 |
Q |
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| T |
41932077 |
tctgataaaaaattgtttcactcataaatcaaa |
41932045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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