View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_29 (Length: 405)
Name: NF0953_high_29
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 5394615 - 5394329
Alignment:
| Q |
23 |
atatttggggtgcagtggatcctaacgcagagaatgaaacattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcgga |
122 |
Q |
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||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5394615 |
atatttggggtgcagcggatcctaacgcaaagaatgaagcattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcaga |
5394516 |
T |
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| Q |
123 |
acagtttgagatcgatgattatggatttgaggaggggtcggagttgaggttgtcggagatgatgaaagatatgggtggtgtgtgggaagagattgtgagg |
222 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
5394515 |
acggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagg |
5394416 |
T |
|
| Q |
223 |
gaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagattttagtttgagactggagggtgtgttggat |
309 |
Q |
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|| |||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5394415 |
gagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttagtttgagactggagggtgtgttggat |
5394329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 5391077 - 5390791
Alignment:
| Q |
23 |
atatttggggtgcagtggatcctaacgcagagaatgaaacattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcgga |
122 |
Q |
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||||||||||||||||||||||||| ||| |||||||| ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||| || |
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| T |
5391077 |
atatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcaga |
5390978 |
T |
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| Q |
123 |
acagtttgagatcgatgattatggatttgaggaggggtcggagttgaggttgtcggagatgatgaaagatatgggtggtgtgtgggaagagattgtgagg |
222 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
5390977 |
acggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagg |
5390878 |
T |
|
| Q |
223 |
gaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagattttagtttgagactggagggtgtgttggat |
309 |
Q |
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|| |||| || ||| |||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
5390877 |
gagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttggat |
5390791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 5399796 - 5399510
Alignment:
| Q |
23 |
atatttggggtgcagtggatcctaacgcagagaatgaaacattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcgga |
122 |
Q |
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||||||||||||||||||||||||| ||| |||||||| ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||| || |
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| T |
5399796 |
atatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcaga |
5399697 |
T |
|
| Q |
123 |
acagtttgagatcgatgattatggatttgaggaggggtcggagttgaggttgtcggagatgatgaaagatatgggtggtgtgtgggaagagattgtgagg |
222 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
5399696 |
acggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagg |
5399597 |
T |
|
| Q |
223 |
gaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagattttagtttgagactggagggtgtgttggat |
309 |
Q |
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|| |||| || ||| |||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
5399596 |
gagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttggat |
5399510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 3818940 - 3818681
Alignment:
| Q |
23 |
atatttggggtgcagtggatcctaacgcagagaatgaaacattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcgga |
122 |
Q |
| |
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||||||||| ||||||||||||| | || |||||||| |||||||||| ||||||||||||||||| | |||||| || ||||||||||| | ||||| |
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| T |
3818940 |
atatttgggctgcagtggatccttatgctaagaatgaagcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggttatcgcgga |
3818841 |
T |
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| Q |
123 |
acagtttgagatcgatgattatggatttgaggagg--ggtcggag-ttgaggttgtcggagatgatgaaagatatgggtggtgtgtgggaagagattgtg |
219 |
Q |
| |
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||| |||| ||| || || ||||| || || |||| |||| | |||| ||| ||||| ||||||| |||| |||| ||| ||||| ||||||||| |
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| T |
3818840 |
acaatttgggattgaggagtatgggttcgacgaggaaggtcctcgtttgaagttaacggagttgatgaaggataagggtcctgtttgggatgagattgtg |
3818741 |
T |
|
| Q |
220 |
agggaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagat |
279 |
Q |
| |
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| ||| |||||||| | || ||||| |||||||||| || ||||||||||||||| |
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| T |
3818740 |
aaggagaatgggttgcaggtaacgaagctggaagaagttgctgagtggtggtttgcagat |
3818681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 47338937 - 47339196
Alignment:
| Q |
23 |
atatttggggtgcagtggatcctaacgcagagaatgaaacattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcgga |
122 |
Q |
| |
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||||||||| ||||||||||||| | || |||||||| |||||||||| ||||||||||||||||| | |||||| || ||||||||||| | ||||| |
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| T |
47338937 |
atatttgggctgcagtggatccttatgctaagaatgaagcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggttatcgcgga |
47339036 |
T |
|
| Q |
123 |
acagtttgagatcgatgattatggatttgaggagg--ggtcggag-ttgaggttgtcggagatgatgaaagatatgggtggtgtgtgggaagagattgtg |
219 |
Q |
| |
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||| |||| ||| || || ||||| || || |||| |||| | |||| ||| ||||| ||||||| |||| |||| ||| ||||| ||||||||| |
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| T |
47339037 |
acaatttgggattgaggagtatgggttcgacgaggaaggtcctcgtttgaagttaacggagttgatgaaggataagggtcctgtttgggatgagattgtg |
47339136 |
T |
|
| Q |
220 |
agggaaaatgggttattgcacacaaagcttgaagaagttggagattggtggtttgcagat |
279 |
Q |
| |
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| ||| |||||||| | || ||||| |||||||||| || ||||||||||||||| |
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| T |
47339137 |
aaggagaatgggttgcaggtgacgaagctggaagaagttgctgagtggtggtttgcagat |
47339196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 47349948 - 47350071
Alignment:
| Q |
25 |
atttggggtgcagtggatcctaacgcagagaatgaaacattcaattgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcggaac |
124 |
Q |
| |
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||||||| |||||||||| || | || |||||||| | |||||||| || |||||||||||||| | ||||||||| ||||||||||| || |||||| |
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| T |
47349948 |
atttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgtttttaggtggaaacaattgtggaaggttttgacggaac |
47350047 |
T |
|
| Q |
125 |
agtttgagatcgatgattatggat |
148 |
Q |
| |
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| |||||||| || || ||||||| |
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| T |
47350048 |
aatttgagattgaggagtatggat |
47350071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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