View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_3 (Length: 621)
Name: NF0953_high_3
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 73 - 530
Target Start/End: Complemental strand, 35745628 - 35745159
Alignment:
| Q |
73 |
agtgagatgaataacattgaaagacaagacatgcagaagatgttggaagtctagcattacctatctatctgagatatcctaggcactattaattgatatt |
172 |
Q |
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| T |
35745628 |
agtgacatgaataacattgaaagacaagacatgcagaagatgttggaagcttagcattacctatctatctgagatatcctaggcactattaattgatatt |
35745529 |
T |
|
| Q |
173 |
atataagcacttgcagggactgaaagtgataaaaggctctagcacacctaagaagtctt------------------caaaggctcagagcaaagaaaat |
254 |
Q |
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| T |
35745528 |
atataagcacttgcagggactgaaagtgataaaaggctctagcacacctaagaagtcttgcacacctaagaagtcttcaaaggctcagagcaaagaaaat |
35745429 |
T |
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| Q |
255 |
ggagagtcaatggagttatcattcgtaggagcagaccaattgattttaatggtagagattcatacgaagatcatggcattcagagatatcatggacttag |
354 |
Q |
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| T |
35745428 |
ggagagtcaatggagttatcattcgtaggagcagaccaattgattttaatggtagagattcatatgaagatcatggcattcagagatatcatggacttag |
35745329 |
T |
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| Q |
355 |
ctccatgtaacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcctgatctgttgt |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35745328 |
ctccatgtaacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcc---tctgttgt |
35745232 |
T |
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| Q |
455 |
aaaatgacaatcattattcttggnnnnnnnnnnnnnnnatatgtcacattgcagatagttatgagaacactgaatg |
530 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35745231 |
aaaatgacaatcattattcttgg---ttttttttttttatatgtcacattgcagatagttatgagaacactgaatg |
35745159 |
T |
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