View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_high_35 (Length: 387)
Name: NF0953_high_35
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 40063480 - 40063121
Alignment:
| Q |
17 |
agtatttctcatttacgcttcagtagtgttggtcacatccattgattcattgcgtgcgtcagtgtatatatatgtaagtaaaacctagctaccgtcacgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063480 |
agtatttctcatttacgcttcagtagtgttggtcacatccattgattcattgcgtgcgtcagtgtatatatatgtaagtaaaacctagctaccgtcacgt |
40063381 |
T |
|
| Q |
117 |
catgttcatttatttttaatccataaataaacagagtactctgttttcttttcttttctccatcatcatcatcaannnnnnn-cccttatacacgttttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40063380 |
catgttcatttatttttaatccataaataaacagagtactctgttttcttttctattctccatcatcatcatcaattttttttcccttatacacgttttt |
40063281 |
T |
|
| Q |
216 |
atcacatctattttttccttgtcagagaaaaaacagtttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063280 |
atcacatctattttttccttgtcagagaaaaaacagtttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccat |
40063181 |
T |
|
| Q |
316 |
ttcataactcaacacaacaatttattatttattattacaacacagcacaaacccgcttca |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40063180 |
ttcataactcaacacaacaatttattatttattattacaacacagcacaaacccacttca |
40063121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University