View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_high_6 (Length: 537)
Name: NF0953_high_6
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 34078680 - 34078144
Alignment:
| Q |
1 |
ttggtaaccttctccaattagggcaacttcctcatagagacttagcatcattatgtgataaatatggacccttagtttatttaaaattaggaaatattga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078680 |
ttggtaaccttctccaattagggcaacttcctcatagagacttagcatcattatgcgataaatatggacccttagtttatttaaaattaggaaatattga |
34078581 |
T |
|
| Q |
101 |
tgctattactactaatgaccctgatattatacgtgaaatacttctttctcaagatgatgtttttgcctctcgtccacgcactcttgctgcaattcattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078580 |
tgctattactactaatgaccctgatattatacgtgaaatacttctttctcaagatgatgtttttgcctctcgtccacgcactcttgctgcaattcattta |
34078481 |
T |
|
| Q |
201 |
gcatatgggtgtggtgatgttgcattggcaccattaggacctcattggaagcgaatgagaagaatttgcatggaacacttactaactacaaagagacttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078480 |
gcatatgggtgtggtgatgttgcattggcaccattaggacctcattggaagcgaatgagaagaatttgcatggaacacttactaactacaaagagacttg |
34078381 |
T |
|
| Q |
301 |
aatccttctcaaaacatcgtcaagaagaagcacaacatcttgttaaagatgtttttgcacgggccaatttcgaaaatcccattaatttaagagaaatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
34078380 |
aatccttctcaaaacatcgtcaagaagaagcacaacatcttgttaaagatgtttttgcacgggccaaatccgaaaatcccattaatttaagagaaatttt |
34078281 |
T |
|
| Q |
401 |
gggtgctttttcaatgaacaatgtcactagaatgttgttaggaaaacaatattttggttctaaatctgcagggccacaagaagctatggagtttatgcac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078280 |
gggtgctttttcaatgaacaatgtcactagaatgttgttaggaaaacaatattttggttctaaatctgcagggccacaagaagctatggagtttatgcac |
34078181 |
T |
|
| Q |
501 |
ataactcatgaattattttggttacttggtgtgatat |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34078180 |
ataactcatgaattattttggttacttggtgtgatat |
34078144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University