View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_63 (Length: 264)
Name: NF0953_high_63
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 30627269 - 30627068
Alignment:
| Q |
20 |
tccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaa |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30627269 |
tccaatcatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacacattgtttttgtcttttttaaa |
30627170 |
T |
|
| Q |
120 |
taaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttata |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
30627169 |
taaaataaaaacattaacagcaactctatcacatcacgtcaaactccattgtactttctagatctattcatgatgtctttcagtttggcaaaagtttata |
30627070 |
T |
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| Q |
220 |
ca |
221 |
Q |
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|| |
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| T |
30627069 |
ca |
30627068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 38459954 - 38460152
Alignment:
| Q |
27 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaataaaata |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38459954 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttatacctgttgcaatataacacattgtttttgtcttttttaaataaaata |
38460053 |
T |
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| Q |
127 |
aaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttatacatagtg |
226 |
Q |
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| T |
38460054 |
aaaacattaacaacaactctatcacatcacgtcaaa----atcgtactttctagatctattcatggtgtctttcagtttggcaaaagtttatacttagtg |
38460149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 38461057 - 38460859
Alignment:
| Q |
27 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaataaaata |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38461057 |
atattatgccacttcattccatttctttttccctttacctagtaaccggttatacctgttgcaatataacacattgtttttgtcttttttaaataaaata |
38460958 |
T |
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| Q |
127 |
aaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttatacatagtg |
226 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38460957 |
aaaacattaacaacaactctatcacatcacgtcaaa----atcatactttctagatctattcatggtgtctttcagtttggcaaaagtttatacttagtg |
38460862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 12422565 - 12422760
Alignment:
| Q |
20 |
tccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaa |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12422565 |
tccaatcatattatgccacttcattccatttcttttt----------agtaaccggttgtacctgttgcaatataacacattgtttttgtcttttttaaa |
12422654 |
T |
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| Q |
120 |
taaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttata |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |
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| T |
12422655 |
taaaataaaaacattaacagcaactctatcacatcacgtcaaa----atcgtactttctagatctatttatggtgtctttcagtttagcaaaagtttata |
12422750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 2065625 - 2065473
Alignment:
| Q |
19 |
gtccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaa |
118 |
Q |
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||||||| ||||| |||||| |||| |||||||| |||||||| | ||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
2065625 |
gtccaatcatattttgccacctcatcccatttctctttcccttcaactagtaatcggttgtacctgttgcaaaataacacattgtttttgtcttttttaa |
2065526 |
T |
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| Q |
119 |
ataaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgt |
171 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
2065525 |
ataaaataaaaacattaacagcaactccatcacatctcgtcaaacaccatcgt |
2065473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 8718978 - 8719167
Alignment:
| Q |
20 |
tccaataatattatgccacttcattccatttctttttccctttacctagtaaccggttgtacctgttgcaatataacatattgtttttgtcttttttaaa |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8718978 |
tccaatcatattatgccacttcattccatttattttt----------agtaaccggttgtacctgttgcaatataacacattgtttttgtcttttttaaa |
8719067 |
T |
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| Q |
120 |
taaaataaaaacattaacagcaactctatcacattacgtcaaactccatcgtactttctagatctattcatggtgtctttcaatttggcaaaagtttata |
219 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
8719068 |
taaaataaaaacattaacaacaactctatcacatcacgtcaaa----atcgtactttctagatctatttatggtgtcttt--gtttagcaaaagtttata |
8719161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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