View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_64 (Length: 260)
Name: NF0953_high_64
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_64 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 40457041 - 40457271
Alignment:
| Q |
30 |
agttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgttattggaagtagatttgccttttgggtg |
129 |
Q |
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| T |
40457041 |
agttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgttattggaagtagatttgccttttgggtg |
40457140 |
T |
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| Q |
130 |
ccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgtgaattcctttcttaggatacttcttg |
229 |
Q |
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| T |
40457141 |
ccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgcgaattcctttcttaggatacttcttg |
40457240 |
T |
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| Q |
230 |
acagcaagggcagacccctcgaaagactcac |
260 |
Q |
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| T |
40457241 |
acagcaagggcagacccctcgaaagactcac |
40457271 |
T |
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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 56393175 - 56393289
Alignment:
| Q |
119 |
ccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgtgaattcctttcttag |
218 |
Q |
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| T |
56393175 |
ccttttggatgccaatctggatatccatggagtttaaaacatgcttccactacatgattatcaccattacagtgggtacacttacgaactcctttcttgg |
56393274 |
T |
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| Q |
219 |
gatacttcttgacag |
233 |
Q |
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| T |
56393275 |
gatacttcttcacag |
56393289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 27517413 - 27517527
Alignment:
| Q |
119 |
ccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgtgaattcctttcttag |
218 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||| | |
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| T |
27517413 |
ccttttggatgccaatctggatatccatggagtttaaaacatgcttcaactacatgattatcaccattacagtgggtacactaacgaactcctttcttgg |
27517512 |
T |
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| Q |
219 |
gatacttcttgacag |
233 |
Q |
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|||||||||| |||| |
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| T |
27517513 |
gatacttcttcacag |
27517527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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