View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_7 (Length: 528)
Name: NF0953_high_7
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_7 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 3734 - 4194
Alignment:
| Q |
1 |
tgcatatataaatgaaaataacaatgatactgagtaaataaacaagatgcatgctagccacatacatcaaa-gggggcagcaacaacagtagagagtaga |
99 |
Q |
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| T |
3734 |
tgcatatataaatgaaaataacaatgatactgggtaaataaacaagttgcatgctagccacatacatcaaaagggggcagcaacaacagtagagagtaga |
3833 |
T |
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| Q |
100 |
tagagtatagttatagtgaaagtggagaggccaagatctttgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatccaaagaaaaata |
199 |
Q |
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| T |
3834 |
tagagtatagttgtagtgaaagtggagaggccaagatctttgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatccaaagaaaaata |
3933 |
T |
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| Q |
200 |
gaaaatcacatatcaaagttatcgcgcggcagctggttcaggttgggcagagcattagggttttcttgaggatgattgagagaatgtaacatacaaatga |
299 |
Q |
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|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3934 |
gaaaatcacatatcaaagttatggcgcggcggctggtccaggttgggcagagcattagggttttcttgaggatgattgagagaatgtaacatacaaatga |
4033 |
T |
|
| Q |
300 |
cgacgcagcaaatatcgtaaactctttcactatctctgatgtgggagggtcatatgagaagaaactcatgcaaaggccaagaatgtatactgaaattttc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4034 |
cgacgcagcaaatatcgtaaactctttcactatctctgatgtgggagggtcatatgagaagaaactcatgcaaaggccaagaatgcatactgaaattttc |
4133 |
T |
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| Q |
400 |
tcaatgtcatctttcaagtcctcagaaaggccaagaatgcataccttttggattgtgatag |
460 |
Q |
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| T |
4134 |
tcaatgtgatctttcaagtcctgagaaaggccaagaatgcataccttttgggttgtgatag |
4194 |
T |
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