View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_76 (Length: 244)
Name: NF0953_high_76
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_76 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31057326 - 31057540
Alignment:
| Q |
1 |
ctggaccaattcctgcctctataggaaatttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaa |
100 |
Q |
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| T |
31057326 |
ctggaccaattcctgcctctataggaaatttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaa |
31057425 |
T |
|
| Q |
101 |
tttgaagtggctcactgtttttgaagtagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggttttcctttattgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
31057426 |
tttgaagtggctcactgtttttgaagtagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggatttcctttgttgtg |
31057525 |
T |
|
| Q |
201 |
tccgaaaatgatttt |
215 |
Q |
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||||||||||||||| |
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| T |
31057526 |
tccgaaaatgatttt |
31057540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 31139144 - 31139352
Alignment:
| Q |
7 |
caattcctgcctctataggaaatttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaatttgaa |
106 |
Q |
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||||||||||| ||||||||||||||||||||||| | | | ||||||||||||||||||||||| |||||||||||| || |||||||||||||||| |
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| T |
31139144 |
caattcctgccactataggaaatttgatcaatttggattcctttagtgtccaagaaaacaatctcacaggaactattccaactacaattggaaatttgaa |
31139243 |
T |
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| Q |
107 |
gtggctcactgtttttgaagtagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggttttcctttattgtgtccgaa |
206 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
31139244 |
tcggctcactgtctttgaagtagctgccaataaacttcatggtagaattccaaatggactttataacataaccaattggttttcctttattgtgtccaaa |
31139343 |
T |
|
| Q |
207 |
aatgatttt |
215 |
Q |
| |
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||||||||| |
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| T |
31139344 |
aatgatttt |
31139352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31101761 - 31101975
Alignment:
| Q |
1 |
ctggaccaattcctgcctctataggaaatttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || | | |||||||||| |||||||||||| ||||||||||||||| |||| ||||| |
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| T |
31101761 |
ctggatcaattcctgcctctataggaaatttgatcaatttgaaatactttagtgtccaagtaaacaatctcacaggaactattccagctacaatcggaaa |
31101860 |
T |
|
| Q |
101 |
tttgaagtggctcactgtttttgaagtagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggttttcctttattgtg |
200 |
Q |
| |
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||||||| ||||| ||| |||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||| |
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| T |
31101861 |
tttgaagcagctcattgtctttgaagtagcttccaacaaactttatggtagaattccaaatggactttataacattaccaattggtattcctttgttgtg |
31101960 |
T |
|
| Q |
201 |
tccgaaaatgatttt |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
31101961 |
tccgaaaatgatttt |
31101975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31182853 - 31183067
Alignment:
| Q |
1 |
ctggaccaattcctgcctctataggaaatttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaa |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
31182853 |
ctggatcaattcctgcctctataggaaatttgatcaatttggtaatccttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaa |
31182952 |
T |
|
| Q |
101 |
tttgaagtggctcactgtttttgaagtagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggttttcctttattgtg |
200 |
Q |
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||||||| ||||| ||| |||||| || ||| |||||||||||||||||||||||||||| || |||||| |||||||||| ||||||| ||||| |
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| T |
31182953 |
tttgaagctgctcagtgtctttgaattaactaaaaataaacttcatggtagaattccaaatgaactcaataacaacaccaattggtattcctttcttgtg |
31183052 |
T |
|
| Q |
201 |
tccgaaaatgatttt |
215 |
Q |
| |
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|| || ||||||||| |
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| T |
31183053 |
tctgagaatgatttt |
31183067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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