View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_78 (Length: 234)
Name: NF0953_high_78
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14609998 - 14609787
Alignment:
| Q |
1 |
cctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttat |
100 |
Q |
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| T |
14609998 |
cctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttat |
14609899 |
T |
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| Q |
101 |
caggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttcctgtgggatttgtcggggttacaacgtggaatttctcatgaaggacgtc |
200 |
Q |
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| T |
14609898 |
caggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttgctgtgggatttgtcggggttacaacgtggaatttctcatgaaggacgtc |
14609799 |
T |
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| Q |
201 |
taggtcagtgct |
212 |
Q |
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|||||||||||| |
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| T |
14609798 |
taggtcagtgct |
14609787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 14598478 - 14598639
Alignment:
| Q |
1 |
cctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttat |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
14598478 |
cctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctcctttt |
14598577 |
T |
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| Q |
101 |
caggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttcctgtgggattt |
162 |
Q |
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| T |
14598578 |
caggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattt |
14598639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 12194801 - 12194907
Alignment:
| Q |
16 |
acataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcaggatcagccgtcg |
115 |
Q |
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|||||||| ||||| || || || || ||||||||||||| || |||||||||||||| || || ||||| || |||||||| || ||||| || || | |
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| T |
12194801 |
acataacatgcgagtttatcaacagggtaatcaactgctagaattgaaagaatggtatttgcggtaacaaggggtggctctttttctggatcggcagttg |
12194900 |
T |
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| Q |
116 |
acacaaa |
122 |
Q |
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||||||| |
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| T |
12194901 |
acacaaa |
12194907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 44633033 - 44632913
Alignment:
| Q |
4 |
ccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcag |
103 |
Q |
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|||||||| || | ||||||||| | || ||||| |||||||||||||| | || || | |||||| || |||||||||||||| |||||||| || | |
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| T |
44633033 |
ccatcatcagacaaataacaagcaactttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaagaggtggctctttttctg |
44632934 |
T |
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| Q |
104 |
gatcagccgtcgacacaaaga |
124 |
Q |
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|||| || || || ||||||| |
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| T |
44632933 |
gatctgcagttgaaacaaaga |
44632913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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