View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_high_84 (Length: 217)
Name: NF0953_high_84
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 16956255 - 16956375
Alignment:
| Q |
1 |
ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaagaaa---tctgtggttaac |
97 |
Q |
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| T |
16956255 |
ttcctgtcctggataatggaattgaaagtgtaatttttctat--gacattacaatttataaacatgatgggtaggaaagaagaaatactatgtggttaac |
16956352 |
T |
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| Q |
98 |
atggtgatactcctacacaggtt |
120 |
Q |
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| T |
16956353 |
atggtgatactcctacacaggtt |
16956375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16935048 - 16934978
Alignment:
| Q |
1 |
ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatggg |
71 |
Q |
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|||| ||||||||||||||||| ||||||| | ||| | || |||||||||||||||||| |||||||| |
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| T |
16935048 |
ttccagtcctggataatggaatcgaaagtgcagctttgcaatgtcatattacaatttataaatatgatggg |
16934978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26633725 - 26633834
Alignment:
| Q |
1 |
ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaa-gaaatctgtggttaacat |
99 |
Q |
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|||| ||| |||||||||||||||||||| ||| ||| | || ||||||||||| |||||||||||||| | | || ||| ||||||||||| |||||| |
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| T |
26633725 |
ttccagtcttggataatggaattgaaagtctaactttgcaatgtcatattacaatatataaacatgatggtacgtaaggaaggaaatctgtggataacat |
26633824 |
T |
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| Q |
100 |
ggtgatactc |
109 |
Q |
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|| |||||| |
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| T |
26633825 |
tgtaatactc |
26633834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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