View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0953_high_86 (Length: 210)

Name: NF0953_high_86
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0953_high_86
NF0953_high_86
[»] chr5 (2 HSPs)
chr5 (1-86)||(16956255-16956338)
chr5 (1-71)||(16934978-16935048)
[»] chr8 (1 HSPs)
chr8 (1-99)||(26633725-26633824)


Alignment Details
Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16956255 - 16956338
Alignment:
Q  1 ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaagaaat 86  Q
    ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||| ||||||||||||||    
T  16956255 ttcctgtcctggataatggaattgaaagtgtaatttttctat--gacattacaatttataaacatgatgggtaggaaagaagaaat 16956338  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16935048 - 16934978
Alignment:
Q  1 ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatggg 71  Q
    |||| ||||||||||||||||| ||||||| |  ||| | ||  |||||||||||||||||| ||||||||    
T  16935048 ttccagtcctggataatggaatcgaaagtgcagctttgcaatgtcatattacaatttataaatatgatggg 16934978  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26633725 - 26633824
Alignment:
Q  1 ttcctgtcctggataatggaattgaaagtgtaatttttctattgcatattacaatttataaacatgatgggaaggaaagaa-gaaatctgtggttaacat 99  Q
    |||| ||| |||||||||||||||||||| ||| ||| | ||  ||||||||||| |||||||||||||| | | || ||| ||||||||||| ||||||    
T  26633725 ttccagtcttggataatggaattgaaagtctaactttgcaatgtcatattacaatatataaacatgatggtacgtaaggaaggaaatctgtggataacat 26633824  T

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