View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_104 (Length: 228)
Name: NF0953_low_104
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_104 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 275704 - 275925
Alignment:
| Q |
7 |
caaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagtta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275704 |
caaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagtta |
275803 |
T |
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| Q |
107 |
taactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaactt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275804 |
taactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaactt |
275903 |
T |
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| Q |
207 |
ttcttttatgatgccgacttct |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
275904 |
ttcttttatgatgccgacttct |
275925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 28594 - 28815
Alignment:
| Q |
7 |
caaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagtta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28594 |
caaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagtta |
28693 |
T |
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| Q |
107 |
taactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaactt |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28694 |
taactctcattggttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaactt |
28793 |
T |
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| Q |
207 |
ttcttttatgatgccgacttct |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
28794 |
ttcttttatgatgccgacttct |
28815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 26396309 - 26396530
Alignment:
| Q |
7 |
caaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagtta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396309 |
caaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagtta |
26396408 |
T |
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| Q |
107 |
taactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaactt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26396409 |
taactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctctttcttcgaacaaatatcttcattaactt |
26396508 |
T |
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| Q |
207 |
ttcttttatgatgccgacttct |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
26396509 |
ttcttttatgatgccgacttct |
26396530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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