View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_107 (Length: 222)
Name: NF0953_low_107
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_107 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 16956375 - 16956182
Alignment:
| Q |
14 |
aacctgtgtaggagtatcaccatgttaaccacaga---tttcttctttccttcccatcatgtttataaattgtaatatgcaatagaaaaattacactttc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
16956375 |
aacctgtgtaggagtatcaccatgttaaccacatagtatttcttctttcctacccatcatgtttataaattgtaatgtc--atagaaaaattacactttc |
16956278 |
T |
|
| Q |
111 |
aattccattatccaggacaggaacacagttcaatttgaacaagctaactagtgtagccaagtaacttgtaaaataataggcatctgtggtgatttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16956277 |
aattccattatccaggacaggaacacagttcaatttgaacaagctaactagtgtagccaagtaacttgtaaaataataggcatctgtggtgatttt |
16956182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 16934978 - 16935048
Alignment:
| Q |
63 |
cccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatccaggacaggaa |
133 |
Q |
| |
|
|||||||| |||||||||||||||||| || | ||| | ||||||| ||||||||||||||||| |||| |
|
|
| T |
16934978 |
cccatcatatttataaattgtaatatgacattgcaaagctgcactttcgattccattatccaggactggaa |
16935048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 26633834 - 26633720
Alignment:
| Q |
25 |
gagtatcaccatgttaaccacagatttc-ttctttccttcccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatcc |
123 |
Q |
| |
|
|||||| || |||||| ||||||||||| ||| || | | |||||||||||||| ||||||||||| || | ||| ||| ||||||||||||||||||| |
|
|
| T |
26633834 |
gagtattacaatgttatccacagatttccttccttacgtaccatcatgtttatatattgtaatatgacattgcaaagttagactttcaattccattatcc |
26633735 |
T |
|
| Q |
124 |
aggacaggaacacag |
138 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
26633734 |
aagactggaacacag |
26633720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University