View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_118 (Length: 202)
Name: NF0953_low_118
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_118 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 41859796 - 41859968
Alignment:
| Q |
1 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
100 |
Q |
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| T |
41859796 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
41859895 |
T |
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| Q |
101 |
tgtgaacttacatatgaggagctttgtttaactttcattttgttctacattaataggtgaaggaagggagtat |
173 |
Q |
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| T |
41859896 |
tgtgaacttacatatgaggagctttgtttaactttcattttgttctacattaataggtgaaggaagggagtat |
41859968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 41887697 - 41887869
Alignment:
| Q |
1 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
100 |
Q |
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| T |
41887697 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatca |
41887796 |
T |
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| Q |
101 |
tgtgaacttacatatgaggagctttgtttaactttcattttgttctacattaataggtgaaggaagggagtat |
173 |
Q |
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| T |
41887797 |
tgtgaacttacatatgaggagctttgtttaacttttattttgttctacattaataggtgaaggaagggagtat |
41887869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 41878667 - 41878834
Alignment:
| Q |
1 |
gtagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagta-gaaacccttcaattattcatcatc |
99 |
Q |
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| T |
41878667 |
gtagttgatcaaataaatgattatgtacttaagttgattcctggtacgtgtaattagttaaccatc--agtagaaagaaacccttcaattattcattatc |
41878764 |
T |
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| Q |
100 |
atgtgaacttacatatgaggagctttgtttaactttcattttgttctac-attaataggtgaaggaaggg |
168 |
Q |
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||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
41878765 |
atgtgaacttaaatttgaggagctttgtttaactttagttttgttctacgattaataggtgaagaaaggg |
41878834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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