View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_12 (Length: 505)
Name: NF0953_low_12
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 97 - 495
Target Start/End: Complemental strand, 1581121 - 1580723
Alignment:
| Q |
97 |
gtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581121 |
gtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccc |
1581022 |
T |
|
| Q |
197 |
cgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581021 |
cgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactga |
1580922 |
T |
|
| Q |
297 |
gatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggagg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580921 |
gatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcggagg |
1580822 |
T |
|
| Q |
397 |
tgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
495 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580821 |
tgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
1580723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 97 - 495
Target Start/End: Original strand, 1603694 - 1604092
Alignment:
| Q |
97 |
gtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603694 |
gtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagtttacttttagtgccc |
1603793 |
T |
|
| Q |
197 |
cgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603794 |
cgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttactga |
1603893 |
T |
|
| Q |
297 |
gatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcggagg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603894 |
gatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcggagg |
1603993 |
T |
|
| Q |
397 |
tgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
495 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603994 |
tgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatc |
1604092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 255 - 467
Target Start/End: Complemental strand, 1587463 - 1587251
Alignment:
| Q |
255 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
354 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
1587463 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
1587364 |
T |
|
| Q |
355 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
454 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||| |
|
|
| T |
1587363 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt |
1587264 |
T |
|
| Q |
455 |
ttcactcttcttt |
467 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
1587263 |
ttaactcttcttt |
1587251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 255 - 467
Target Start/End: Original strand, 1590760 - 1590972
Alignment:
| Q |
255 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
354 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | |||||||| || || |||||| ||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
1590760 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
1590859 |
T |
|
| Q |
355 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
454 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||| |
|
|
| T |
1590860 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt |
1590959 |
T |
|
| Q |
455 |
ttcactcttcttt |
467 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
1590960 |
ttaacacttcttt |
1590972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 1587579 - 1587507
Alignment:
| Q |
112 |
ccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||| |
|
|
| T |
1587579 |
ccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacagtcacttctaaaccatcctgttta |
1587507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 1590654 - 1590716
Alignment:
| Q |
122 |
aaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
184 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
1590654 |
aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggttta |
1590716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 255 - 467
Target Start/End: Original strand, 19270343 - 19270555
Alignment:
| Q |
255 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
354 |
Q |
| |
|
||||||||| |||||||| |||||| |||||| | |||||| ||| ||||||||| |||| |||||||| |||||||||| | ||||||||||| |
|
|
| T |
19270343 |
cttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactc |
19270442 |
T |
|
| Q |
355 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
454 |
Q |
| |
|
|||||||||| |||| | | ||||||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
19270443 |
tttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggt |
19270542 |
T |
|
| Q |
455 |
ttcactcttcttt |
467 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19270543 |
ttcactcttcttt |
19270555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 19270206 - 19270271
Alignment:
| Q |
112 |
ccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctataccaac |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19270206 |
ccacttcctcaacgacattgtgaactctctaaaagaagggtccaacacaatcacttctaaaccaac |
19270271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 420
Target Start/End: Original strand, 39616012 - 39616178
Alignment:
| Q |
254 |
tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaact |
353 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || | || |||||| ||||||||| ||| ||||||||| | |||||||| | |||||||||| |
|
|
| T |
39616012 |
tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact |
39616111 |
T |
|
| Q |
354 |
ctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttg |
420 |
Q |
| |
|
| ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |||| ||||||||| |
|
|
| T |
39616112 |
ccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg |
39616178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 39615893 - 39615951
Alignment:
| Q |
126 |
acattgtgaactctctaaaagaagggtccaacacaatcacttctataccaaccagttta |
184 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
39615893 |
acattgtgaagcttctaaaataagggtccaacacaatcacttctaaaccaaccggttta |
39615951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University