View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_14 (Length: 496)
Name: NF0953_low_14
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Original strand, 7157812 - 7158276
Alignment:
| Q |
5 |
tctccaat-aatatgaatgttccttcatccttgaatgcacgcctaagtgatataattccacatgtgatctttgtgaatccaggagaggtatgcaatggaa |
103 |
Q |
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| T |
7157812 |
tctccaatcaatatgaatgttccttcatccttgaatccacgcctaagtgatataattccacatgtgatctttgtgaatccaggagaggtatgcaatggaa |
7157911 |
T |
|
| Q |
104 |
cctataattcaaacattaacatgttatatattacactacctttcacattttannnnnnnaaaattggttactttataaattgcaatgttaatgtcgattt |
203 |
Q |
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| T |
7157912 |
cctataattcaaacattaacatgttatatattacactacctttcacattttatttttttaaaattggttactttataaattgcaatgttaatgtcgattt |
7158011 |
T |
|
| Q |
204 |
tgatgatgttaaaaatctggttgtttatacaattttcggaagtttttgctgacatatctggtgttgtttggannnnnnngaagattggtttttaccaata |
303 |
Q |
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| T |
7158012 |
tgatgatgttaaaaatctggttgtttatacaattttcggaagtttttgctgacttatctggtggtggttggatttttttgaagattggtttttaccaata |
7158111 |
T |
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| Q |
304 |
agttttttcacttggttgtaggacatcattgaaaaagtagcagcctatagccatgcagtagcagaacctactactgagatatgcattatgtctgctcatg |
403 |
Q |
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| T |
7158112 |
agttttttcacttgtttgtaggacatcattgaaaaagtagcagcctatagccaggcagtagcagaacctgatactgagatatgcattatgtctgctcatg |
7158211 |
T |
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| Q |
404 |
gtttagttggcagtgtcgcccttcatcattcagggagcattgttaattatgaggtagtacttttt |
468 |
Q |
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| T |
7158212 |
gtttagttggcagtgtcgcccttcatcattcagggagcatctttaattacgaggtagtacttttt |
7158276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 60 - 469
Target Start/End: Original strand, 4862722 - 4863127
Alignment:
| Q |
60 |
tccacatgtgatctttgtgaatccaggagaggtatgcaatggaacctataattcaaacattaacatgttatatattacactacctttcacattttannnn |
159 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |
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| T |
4862722 |
tccacatgtgatctttgtgaatcaaggagaggtatgcaatggaacctataattccaacattaacatgttatatattacactttctttcacattcttttca |
4862821 |
T |
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| Q |
160 |
nnnaaaattggttactttataaattgcaatgttaatgtcgattttgatgatgttaaaaatctggttgtttatacaattttcggaagtttttgctgacata |
259 |
Q |
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| T |
4862822 |
aaaaaaaatggttactttataaattacaatgttaatgtatattttgataatgttaaaaaggtggtcgtttatagaatttttgaaaatgtttgttgacaga |
4862921 |
T |
|
| Q |
260 |
tctggtgttgtttggannnnnnngaagattggtttttaccaataagttttttcacttggttgtaggacatcattgaaaaagtagcagcctatagccatgc |
359 |
Q |
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| T |
4862922 |
tctggttgtggttgaatttttttcaagattggtttttactactatgtttttt----tttttgtaggacataattgcaaaagttacagcctttagccaggc |
4863017 |
T |
|
| Q |
360 |
agtagcagaacctactactgagatatgcattatgtctgctcatggtttagttggcagtgtcgcccttcatcattcagggagcattgttaattatgaggta |
459 |
Q |
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| T |
4863018 |
agtagcaggacctaatattgagatatgcattttgtctgctcatggtttagttggcactgtcgcccttcatcatttagggagcattattaattacaaggta |
4863117 |
T |
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| Q |
460 |
gtactttttg |
469 |
Q |
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|||||||||| |
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| T |
4863118 |
gtactttttg |
4863127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 468
Target Start/End: Original strand, 4812276 - 4812359
Alignment:
| Q |
385 |
tgcattatgtctgctcatggtttagttggcagtgtcgcccttcatcattcagggagcattgttaattatgaggtagtacttttt |
468 |
Q |
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| T |
4812276 |
tgcattctttctgctcatggtttggttggcaatgctgccctttatcagtcagggtccgttgttacttacgaggtagtacttttt |
4812359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 469
Target Start/End: Complemental strand, 14418423 - 14418323
Alignment:
| Q |
369 |
acctactactgagatatgcattatgtctgctcatggtttagttggcagtgtcgcccttcatcattcagggagcattgttaattatgaggtagtacttttt |
468 |
Q |
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| T |
14418423 |
acctaatacagagatgtgcattctttctgctcatggtttagttggcactgtcgcacttcatcaacctggaagaatttttatttgtgaggtagtccttttt |
14418324 |
T |
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| Q |
469 |
g |
469 |
Q |
| |
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| |
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| T |
14418323 |
g |
14418323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 14418552 - 14418502
Alignment:
| Q |
167 |
ttggttactttataaattgcaatgttaatgtcgattttgatgatgttaaaa |
217 |
Q |
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||||||||||||||| ||| |||| |||||| ||||||||||||||||||| |
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| T |
14418552 |
ttggttactttataagttgaaatgataatgtagattttgatgatgttaaaa |
14418502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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