View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_18 (Length: 475)
Name: NF0953_low_18
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 95 - 461
Target Start/End: Original strand, 29421328 - 29421694
Alignment:
| Q |
95 |
ccttttatgcatttgttgaaacttgaattttttgtgttgatggctagctgtttgaagctgtcttgatttccttttaaatttgaagattaacttattaggt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
29421328 |
ccttttatgcatttgttgaaacttgaattttttgtgttgatggctagctgtttgaagctgtcttggttcccttttaaatttgaagattaacttattaggt |
29421427 |
T |
|
| Q |
195 |
ctttgccaatactttttcctctataatatatannnnnnnccagatttttgtcgatgatcttaaatccataccgagttgttaattcttgctgctgagttag |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29421428 |
ctttgccaatactttttcctctataatatatatttttt-ccagatttttgtcgatgatcttaaatccataccgagttgttaattcttgctgctgagttag |
29421526 |
T |
|
| Q |
295 |
taa-cttgtttagtaattaatcaagatgaatcaactacaagactctaccacagtgttgtgtttagtttctagctaatcattttgttgttggctgaatctg |
393 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29421527 |
taaacttgtttagtaattaatcaagatgaatcaactacaaaactctaccagagtgttgtgtttagtttctagctaatcattttgttgctggctgaatctg |
29421626 |
T |
|
| Q |
394 |
cttgctggctcatttatgttacattggctggtcggtactttgtttagattggcatagttttgtggata |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29421627 |
cttgctggctcatttatgttacattggctggtcggtactttgtttagattggcatagttttgtggata |
29421694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 29457189 - 29457327
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacaccttttatgcatttgttgaaacttgaattttttgt |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
29457189 |
ctataattcaaattcttaataaaagtgaactcctaagataatgatattatctacaatgaccaacaccttttatgcattatttgaaacttggatcttttgt |
29457288 |
T |
|
| Q |
130 |
gttgatggctagctgtttgaagctgtcttgatttccttt |
168 |
Q |
| |
|
| ||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
29457289 |
gctgatggctagctgttggaacatgtcttgattcccttt |
29457327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 29418947 - 29419015
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt |
98 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
29418947 |
ctataattcaaattcctaataaaagataactcctaagataatgatataatctacaatggccaacacctt |
29419015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 29457654 - 29457708
Alignment:
| Q |
404 |
catttatgttacattggctggtcggtactttgtttagattggcatagttttgtgg |
458 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
29457654 |
catttatgctacattggctggttagtactttgtttttattggcttagttttgtgg |
29457708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 29457415 - 29457467
Alignment:
| Q |
166 |
ttttaaatttgaagattaacttattaggtctttgccaatactttttcctctat |
218 |
Q |
| |
|
||||||||| ||| ||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
29457415 |
ttttaaattggaaacttaacttcttacgactttgccaatactttttcctctat |
29457467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 24337684 - 24337752
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt |
98 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| ||||||||| |||| |||||||| || ||||||||| |
|
|
| T |
24337684 |
ctataattcaaattgctaattaaagataactcttaagataattatataatctacaatgagcaacacctt |
24337752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 24412277 - 24412345
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt |
98 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || |||||| |||| |||||||| || ||||||||| |
|
|
| T |
24412277 |
ctataattcaaattgctaattaaagataactcttatgataattatataatctacaatgagcaacacctt |
24412345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University