View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0953_low_20 (Length: 472)

Name: NF0953_low_20
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0953_low_20
NF0953_low_20
[»] chr3 (1 HSPs)
chr3 (101-459)||(42107348-42107706)
[»] chr2 (2 HSPs)
chr2 (101-295)||(38051068-38051267)
chr2 (232-299)||(38022420-38022487)
[»] chr8 (3 HSPs)
chr8 (232-299)||(27325683-27325750)
chr8 (258-298)||(15820730-15820770)
chr8 (249-301)||(42024660-42024712)
[»] chr5 (2 HSPs)
chr5 (242-302)||(8962280-8962340)
chr5 (259-299)||(30700150-30700190)
[»] chr6 (1 HSPs)
chr6 (233-302)||(3639745-3639814)
[»] chr1 (1 HSPs)
chr1 (258-299)||(16305493-16305534)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 101 - 459
Target Start/End: Complemental strand, 42107706 - 42107348
Alignment:
Q  101 ggtaaaaatggaattaaaaattataatgtataccattccgtccgttttcaaacaacggaatggagagtttgttccgctctgccatagaatacccaaatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  42107706 ggtaaaaatggaattaaaaattataatgtataccattccgtccattttcaaacaatggaatggagagtttgttccgctctgccatagaatactcaaatag 42107607  T
Q  201 tgggatggaaactctatttcattccattctgttccatcccactccatcccattacgttccgctccattccgttcgttttaaaatatccaaacatagcctt 300  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42107606 tgggatggaaactctatttcattccgttccgttccatcccactccatcctattacgttccgctccattccgttcgttttaaaatattcaaacatagcctt 42107507  T
Q  301 aggcgaaaaggtacattgataatcacaaattcatgaggattaatacttttttattacgacgatatactcgtgcacttgctgccgtatcaatgtttattga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  42107506 aggcgaaaaggtacattgataatcacaaattcatgaggattaatacttttttattacgatgatatactcgtgcacttgctgccgtatcaatgtctattga 42107407  T
Q  401 gatggtgcaggaggtcagataatgtgctgcattgtatgataagatgaggagtgcacaaa 459  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  42107406 gatggtgcaggaggtcgaataatgtgctgcattgtatgataagatgaggagtgcacaaa 42107348  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 38051267 - 38051068
Alignment:
Q  101 ggtaaaaatggaattaaaaattataatgtataccattccgtccgttttc-aaacaacggaatggagagtttgttccgctctg-----ccatagaataccc 194  Q
    |||||||||||||| ||||| |||||| |||  ||||  |||||||||| |||||| ||||| |||||||||||||  ||       || |||||||| |    
T  38051267 ggtaaaaatggaat-aaaaagtataatttatttcattttgtccgttttccaaacaatggaatagagagtttgttcccttcccttcctccgtagaatactc 38051169  T
Q  195 aaatagtgggatggaaactctatttcattccattctgttccatcccactccatcccattacgttccgctccattccgttcgttttaaaatatccaaacat 294  Q
    ||| ||||| ||||||||||||||| ||||| ||| | ||||||||||||||| | ||| ||||||| || ||| |||||||||||||||||||||||||    
T  38051168 aaacagtggaatggaaactctattttattccgttccgctccatcccactccattctatttcgttccgatctatttcgttcgttttaaaatatccaaacat 38051069  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 38022487 - 38022420
Alignment:
Q  232 ttccatcccactccatcccattacgttccgctccattccgttcgttttaaaatatccaaacatagcct 299  Q
    ||||||||| |||||| | ||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  38022487 ttccatcccgctccattctattccgctccgctccattccattcgttttaaaatatccaaacatagcct 38022420  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 27325683 - 27325750
Alignment:
Q  232 ttccatcccactccatcccattacgttccgctccattccgttcgttttaaaatatccaaacatagcct 299  Q
    ||||||||| |||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  27325683 ttccatcccgctccattccattccgctccgctccattccattcgttttaaaatatccaaacatagcct 27325750  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 15820730 - 15820770
Alignment:
Q  258 tccgctccattccgttcgttttaaaatatccaaacatagcc 298  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  15820730 tccgttccattccgttcgttttaaaatattcaaacatagcc 15820770  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 42024712 - 42024660
Alignment:
Q  249 ccattacgttccgctccattccgttcgttttaaaatatccaaacatagcctta 301  Q
    ||||| ||||||||||| ||||||| |||||||  |||||||||| |||||||    
T  42024712 ccattccgttccgctccgttccgttggttttaacttatccaaacagagcctta 42024660  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 8962280 - 8962340
Alignment:
Q  242 ctccatcccattacgttccgctccattccgttcgttttaaaatatccaaacatagccttag 302  Q
    |||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  8962280 ctccattccattccgctccgctccattccattcgttttaaaatatccaaacatagccttag 8962340  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 30700150 - 30700190
Alignment:
Q  259 ccgctccattccgttcgttttaaaatatccaaacatagcct 299  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  30700150 ccgctccattccattcgttttaaaatatccaaacatagcct 30700190  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 3639745 - 3639814
Alignment:
Q  233 tccatcccactccatcccattacgttccgctccattccgttcgttttaaaatatccaaacatagccttag 302  Q
    |||||||| |||| | ||||| | | |||||||||||| |||||||||||||||||||||||||||||||    
T  3639745 tccatcccgctccgttccattccatcccgctccattccattcgttttaaaatatccaaacatagccttag 3639814  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 16305534 - 16305493
Alignment:
Q  258 tccgctccattccgttcgttttaaaatatccaaacatagcct 299  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  16305534 tccgttccattccgttcgttttaaaatatccaaacatagcct 16305493  T

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