View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_21 (Length: 471)
Name: NF0953_low_21
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 29 - 440
Target Start/End: Complemental strand, 41915289 - 41914878
Alignment:
| Q |
29 |
attttgctcattctgcaatacaaaaatttagccgtggcattaaccattttaccatttcattaaccnnnnnnntgtatgttcttaaccactttttaacatg |
128 |
Q |
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| T |
41915289 |
attttgctctttctccaatacaaaaatttagccgtggcattaaccattttaccacttcattaaccaaaaaaatgtatgttcctaaccactttttaacatg |
41915190 |
T |
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| Q |
129 |
aatctcattaaccattttgactctttcattaacaactaaaatgcaagtcatgaaccacttattttacaaatttcaaaagaatgacattacacacatttat |
228 |
Q |
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| T |
41915189 |
aatctcattaaccattttgactctttcattaacaactaaaatgcaagtcatgaaccacttattttacaaatttcaaaagaatgacattacacacatttat |
41915090 |
T |
|
| Q |
229 |
gtaaaataagtatttaatgtaaaataatctcgtgcttaatgaagtaatcaaaatgtttaatgagatatgtctaatatgttcaaaaagttatcaacaacat |
328 |
Q |
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| T |
41915089 |
gtaaaataagtgtttaatgtgaaataattttgtggttaatgaagtaatcaaaatgtttaatgagatatgtctaatatgttcaaaaagttatcaacaacat |
41914990 |
T |
|
| Q |
329 |
acatttttaggtgaatgaaatgacgaaactgattaacaacacaacttaaattttgtattagaattaaaaatacttatctttataaaagaactttaacata |
428 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
41914989 |
acatttttaggtgaatgaaatgccgaaattgattaacaacacaactcaaattttgtattagaattaaaaatactcatctttataaaagaactttgacata |
41914890 |
T |
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| Q |
429 |
tatgactttttt |
440 |
Q |
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|||||||||||| |
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| T |
41914889 |
tatgactttttt |
41914878 |
T |
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