View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_24 (Length: 468)
Name: NF0953_low_24
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 28 - 456
Target Start/End: Original strand, 31543796 - 31544230
Alignment:
| Q |
28 |
caaaagtctgggattgaagtgaagttattgtaaccaaggttcacggtttggagcatgtttaggaaagccaaatcaggcgaaggaccgttcagtgagttgt |
127 |
Q |
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| T |
31543796 |
caaaaatctgggattgaagtaaagttattgtaaccaaggttcacggtttggagcacgtttaggaaagccaaatcaggcaaaggaccgttgagtgagttgt |
31543895 |
T |
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| Q |
128 |
tatgaagatcgatgtcggtgagattattgagtgagttgaaattctgagggattgtccctgtgagtgaacttgatggaagcttgatggcagtgacaacttg |
227 |
Q |
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| T |
31543896 |
tatgaagatcgatgtccgtgagattattgagagagttgaaattctcagggattatccctgtgagagaacttgatggaagcttgatggcggtgacaacttg |
31543995 |
T |
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| Q |
228 |
attagattggtcgcacgtgatgccgttccatttgcagtagtgaatgttgctagaccagcctttgggagttggggtcagtgctttcataagttgggacatg |
327 |
Q |
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| T |
31543996 |
attagattggtcacacctgatgccattccatttgcagtagtgaatgttgccagaccagcctttgggagttggggtcagtgctttcataagttgggacatg |
31544095 |
T |
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| Q |
328 |
taatctgcatctttctctccataagtt---ggaa---tgacaatgatgaggatggaaaaatagtacaaaactgattgttggggcaatgttttcatgctta |
421 |
Q |
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| T |
31544096 |
taatctgcatctttctctccattagttatagtaaccgttacaatgatgaggatggaaaaatagtacaaaactgattgttggggcaatgttttcatgctta |
31544195 |
T |
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| Q |
422 |
tttggtcactaacagtgtactaaattttgtatatt |
456 |
Q |
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| T |
31544196 |
tttagtcactaacagtgcactaaattttgtatatt |
31544230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 31535365 - 31535449
Alignment:
| Q |
247 |
atgccgttccatttgcagtagtgaatgttgctagaccagcctttgggagttggggtcagtgctttcataagttgggacatgtaat |
331 |
Q |
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| T |
31535365 |
atgccgttccatctgcagtagtgagtgttgttagaccagttagagggagttggggttagtgctttcaaaagtttggacatgtaat |
31535449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 31535217 - 31535334
Alignment:
| Q |
96 |
caaatcaggcgaaggaccgttcagtgagttgttatgaagatcgatgtcggtgagattattgagtgagttgaaattctgagggattgtccctgtgagtgaa |
195 |
Q |
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| T |
31535217 |
caaatcaggcaaagtaccggtgagtgagttgttgtggaggtcgatgtgggttagataagagagagagttgaggttggaagggagtgtaccagtgagtgaa |
31535316 |
T |
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| Q |
196 |
cttgatggaagcttgatg |
213 |
Q |
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| T |
31535317 |
cttgatggaagcgtgatg |
31535334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 31550656 - 31550579
Alignment:
| Q |
254 |
tccatttgcagtagtgaatgttgctagaccagcctttgggagttggggtcagtgctttcataagttgggacatgtaat |
331 |
Q |
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| T |
31550656 |
tccaattgcagtgatgagtgttgttagaccagccagaaggagttggggtcaatgctttcaaaagttgggacatataat |
31550579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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