View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_25 (Length: 466)
Name: NF0953_low_25
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 39245244 - 39244871
Alignment:
| Q |
1 |
attaaaattgcaaaattataaaccatatacaaaatctcaaatcatcccaaaaaataattcacgaacatcaatgttcttacatatttttctatattgtcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245244 |
attaaaattgcaaaattataaaccatatacaaaatctcaaatcatcccaaaaaataattcacgaacatcaatgttcttacatatttttctatattgtcgt |
39245145 |
T |
|
| Q |
101 |
cgtcttcttcaccaatattctacactatgaccatggtggagctagaaaccaatattagagtttctttcgnnnnnnnnnnnn-----aggcaattgaattt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39245144 |
cgtcttcttcaccaatattctacactatgaccatggtggagctagaaaccaatattagagtttctttcgtttttttttttttttttaggcaattgaattt |
39245045 |
T |
|
| Q |
196 |
ctttcattgttcgtcatgtgtttaattttacatccaccaacaactaaaatgaagaaaaacactaaagagttgacatgatgaatttgagatgggagacaat |
295 |
Q |
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||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245044 |
ctttcgttgttcgtcatgcgtttaattttacatccagcaacaactaaaatgaagaaaaacactaaagagttgacatgatgaatttgagatgggagacaat |
39244945 |
T |
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| Q |
296 |
aaggattttcaaaaaattaaaaccttaatctgagatttcatccctttcacatgacatttctttctttacatatt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39244944 |
aaggattttcaaaaaattaaaaccttaatctgagatttcatccctttcacatgacatttctttctttacatatt |
39244871 |
T |
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