View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_38 (Length: 412)
Name: NF0953_low_38
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_38 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 98 - 402
Target Start/End: Complemental strand, 29312495 - 29312191
Alignment:
| Q |
98 |
aaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagac |
197 |
Q |
| |
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||||| ||||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312495 |
aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagac |
29312396 |
T |
|
| Q |
198 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312395 |
atatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
29312296 |
T |
|
| Q |
298 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312295 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
29312196 |
T |
|
| Q |
398 |
tcatc |
402 |
Q |
| |
|
||||| |
|
|
| T |
29312195 |
tcatc |
29312191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 29054436 - 29054828
Alignment:
| Q |
1 |
tcatacccacgagagagtcacgaacaatctgatgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaa |
100 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054436 |
tcatacgcacgagagagtcatgaacaatctgatgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaa |
29054535 |
T |
|
| Q |
101 |
taatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| | |||||| ||||||||| |
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| T |
29054536 |
taatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagtaataatcacacaaacaactttagacata |
29054635 |
T |
|
| Q |
201 |
tacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaag |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
29054636 |
tactaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaccgcattgtcgactgtccattcaaattaagtatcccaaatgcaacagcaag |
29054735 |
T |
|
| Q |
301 |
cttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccactttta |
395 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||| || ||||||| |||||||| ||||| ||||| ||||||||| |||||||||| |
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|
| T |
29054736 |
cttctcactatggttacaaagattctcagttttttcctct--attaatatcaccaagaacataatcagtgtcagccttatatccggccactttta |
29054828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 398
Target Start/End: Original strand, 34635308 - 34635670
Alignment:
| Q |
35 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca |
134 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| ||||| |
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| T |
34635308 |
aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaatttcca |
34635407 |
T |
|
| Q |
135 |
tttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattc |
234 |
Q |
| |
|
||||||||||||| |||||| |||| ||| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34635408 |
tttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattc |
34635507 |
T |
|
| Q |
235 |
tcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagcttt |
333 |
Q |
| |
|
||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||| ||||| |||| |
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|
| T |
34635508 |
tcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacggcaagcttctcactatgcttacaaagactctcaacttt |
34635607 |
T |
|
| Q |
334 |
ttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||||||| |
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|
| T |
34635608 |
ttcctcttgatcaatatcatgcagaacattatcagtgtc--gcttatatccagccgcttttattt |
34635670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 398
Target Start/End: Complemental strand, 28744043 - 28743679
Alignment:
| Q |
35 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca |
134 |
Q |
| |
|
|||||||||||||||| |||| ||||| | || || ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28744043 |
aaatttgagttagacaaactcagataggattatcgtcaccacttaatcccaataatctgattcaaataatcaccataagtctttacaagaacaatttcca |
28743944 |
T |
|
| Q |
135 |
tttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattc |
234 |
Q |
| |
|
||||||||||||| ||||||||||| ||| || |||||||| || || | ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28743943 |
tttttgaagtgatgaaacctcaaggagtctctgacaacaattataacaccgacaaccttagacatatacttaatggcattgtgacaatcaccgcatattc |
28743844 |
T |
|
| Q |
235 |
tcaaattcttataaa-ccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagcttt |
333 |
Q |
| |
|
||||||||||| ||| || ||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| | | ||| |||||||||| |
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|
| T |
28743843 |
tcaaattcttaaaaacccgtattgtcgactgtccattcaaattaagtatcccaaaggcaacagcaagcttctcactatggttacagagactctcagcttt |
28743744 |
T |
|
| Q |
334 |
ttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
398 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
28743743 |
ttcctcttgatcaatatcttgcagaacataatcagtgtcaggcttatatccagccattttcattt |
28743679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 91 - 398
Target Start/End: Original strand, 13792255 - 13792563
Alignment:
| Q |
91 |
ctgagtcaaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaac |
190 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| |||| | |||||| |
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|
| T |
13792255 |
ctgagtcaaataatcaccaaaaatctttacaagaacaatttccatttttgaagtgatgaaacctcaaggagtctctgacgacaatcgtcacaccaacaac |
13792354 |
T |
|
| Q |
191 |
cttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatcccgaat |
289 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||| |
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|
| T |
13792355 |
attggacatatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaacccgtatcgtcgactgtccattcaaattaagtatcccaaat |
13792454 |
T |
|
| Q |
290 |
gcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagcca |
389 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
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|
| T |
13792455 |
gcaacagcaagcttctcactatggttacaaagactctcagctttttcctcttgatcaatatcatgcagaacataatcagtgtcaggcttatatccagccg |
13792554 |
T |
|
| Q |
390 |
cttttattt |
398 |
Q |
| |
|
||||||||| |
|
|
| T |
13792555 |
cttttattt |
13792563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 13792094 - 13792149
Alignment:
| Q |
48 |
acacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataa |
103 |
Q |
| |
|
|||| |||| ||||| |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13792094 |
acacactcagataggatcattgtgacgacttattcccaataatccgagtcaaataa |
13792149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 398
Target Start/End: Complemental strand, 4606 - 4244
Alignment:
| Q |
35 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca |
134 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| ||||| |
|
|
| T |
4606 |
aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaatttcca |
4507 |
T |
|
| Q |
135 |
tttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattc |
234 |
Q |
| |
|
||||||||||||| |||||| |||| ||| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4506 |
tttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattc |
4407 |
T |
|
| Q |
235 |
tcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagcttt |
333 |
Q |
| |
|
||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||| ||||| |||| |
|
|
| T |
4406 |
tcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacggcaagcttctcactatgcttacaaagactctcaacttt |
4307 |
T |
|
| Q |
334 |
ttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
4306 |
ttcctcttgatcaatatcatgcagaacattatcagtgtc--gcttatatccagccgcttttattt |
4244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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