View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0953_low_39 (Length: 408)
Name: NF0953_low_39
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 182 - 395
Target Start/End: Complemental strand, 6240573 - 6240360
Alignment:
| Q |
182 |
tctagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttc |
281 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6240573 |
tctagttgtccctcagtttgacaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttc |
6240474 |
T |
|
| Q |
282 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
381 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6240473 |
catgaagcattagattcttagctaaatctatggcagatttttttatcaatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccat |
6240374 |
T |
|
| Q |
382 |
aatccaaccatatt |
395 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6240373 |
aatccaaccatatt |
6240360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 182 - 388
Target Start/End: Complemental strand, 6211637 - 6211432
Alignment:
| Q |
182 |
tctagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttc |
281 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6211637 |
tctagttgtcccttagttggacagtgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttc |
6211538 |
T |
|
| Q |
282 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
381 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6211537 |
catgaagcattagattcttagctaaatctat-gcagatttttttatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
6211439 |
T |
|
| Q |
382 |
aatccaa |
388 |
Q |
| |
|
||||||| |
|
|
| T |
6211438 |
aatccaa |
6211432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 6211738 - 6211659
Alignment:
| Q |
104 |
aatatttacttgcatactttgagatcaatgacaacctatgcataatcatgcttcttaattggacaaatatgccgatcttc |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6211738 |
aatatttacttgcatactttgagatcaatgataacctatgcataatcatgcttcttaattggacaaatatgccgatcttc |
6211659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 6240674 - 6240598
Alignment:
| Q |
104 |
aatatttacttgcatactttgagatcaatgacaacctatgcataatcatgcttcttaattggacaaatatgccgatc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6240674 |
aatatttacttgcatactttgagatcaatgacaacctatggataatcatgcttcttaattggacaaatatgccgatc |
6240598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 184 - 404
Target Start/End: Original strand, 23427927 - 23428145
Alignment:
| Q |
184 |
tagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttcca |
283 |
Q |
| |
|
||||||| ||||| | ||||| | ||||| ||||||||||| || |||||||||||||||| | ||||||||| || |||| |||||||| ||||| || |
|
|
| T |
23427927 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgaca |
23428026 |
T |
|
| Q |
284 |
tgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccataa |
383 |
Q |
| |
|
|| | |||| | || |||||||||||||| ||| | ||||| ||| || ||| || ||||||||||||||||||||| |||| | ||| ||||| |
|
|
| T |
23428027 |
tgcaacacttggtttttagctaaatctatagcata--ttgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataa |
23428124 |
T |
|
| Q |
384 |
tccaaccatattcttcgacat |
404 |
Q |
| |
|
|||||||||||| || ||||| |
|
|
| T |
23428125 |
tccaaccatattgtttgacat |
23428145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 208 - 377
Target Start/End: Original strand, 17507330 - 17507499
Alignment:
| Q |
208 |
tatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatg-aagcactagattcttagctaa |
306 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| | ||||||||| || ||| |||||||||||||||| |||| || |||| ||||||| ||||| |
|
|
| T |
17507330 |
tatgaccttaaacatttctttgttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttcatgaaaacacttgattctttgctaa |
17507429 |
T |
|
| Q |
307 |
atctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaac |
377 |
Q |
| |
|
|||||| ||| | | |||||| ||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
17507430 |
atctatagca-aatttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaac |
17507499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 1833998 - 1833919
Alignment:
| Q |
230 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagctaaatc |
309 |
Q |
| |
|
||||| |||||||| | |||||||||||| |||||||||||||| ||||| |||| | |||| |||||||||| ||||| |
|
|
| T |
1833998 |
ttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatgcaacactggattcttagccaaatc |
1833919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 15489886 - 15489950
Alignment:
| Q |
248 |
aagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagctaaatctat |
312 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
15489886 |
aagtgaaatattgtctcaatgtgtttgcttcttccatgcaacactgaattcttagctaaatctat |
15489950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 16943892 - 16943965
Alignment:
| Q |
230 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagc |
303 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||| |||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
16943892 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagc |
16943965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 17014557 - 17014630
Alignment:
| Q |
230 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagc |
303 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||| |||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
17014557 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagc |
17014630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University