View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_4 (Length: 598)
Name: NF0953_low_4
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 11 - 531
Target Start/End: Complemental strand, 26967241 - 26966721
Alignment:
| Q |
11 |
cagagagtaattctactagtgaacaaaataactacaacaagagtggttcacaatcaaattacaacaattatcaatcacagccacaagttcagatccttag |
110 |
Q |
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| T |
26967241 |
cagagagtaattctactagtgaacaaaataactacaacaagagtggttcacaatcaaattacaacaattatcaatcacaaccacaagttcagatccttag |
26967142 |
T |
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| Q |
111 |
tagaagatcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26967141 |
tagaagatcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaat |
26967042 |
T |
|
| Q |
211 |
tgtccaacaaagaaaaaagttgagaggggtttagatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcctgtggctaacaaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26967041 |
tgtccaacaaagaaaaaagttgagaggggtttagatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcctgtggctaacaaga |
26966942 |
T |
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| Q |
311 |
ggaacacaaactcgatgtcttcatcgtcgtcgtcactggcaaatcctcctccttcaaatcattttggaaatgaaattcaaatggatttggttgctacacc |
410 |
Q |
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| T |
26966941 |
ggaacacaaactcgatgtcttcatcgtcgttgtcacatgcaaatcctcctccttcaaatcattttggaaatgaaattcaaatggatttggttgctacacc |
26966842 |
T |
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| Q |
411 |
ggagaattcatcgatatcgatcggagatgatgaatttgagcagacttctcataaatctggtggtgaccatgatcagttttgtgaagatgaacctgatgcn |
510 |
Q |
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| T |
26966841 |
ggagaattcatcgatatcgattggagatgatgaattcgagcagacttctcataaatctggtggagatcatgatcagtattgtgaagatgaacctgatgca |
26966742 |
T |
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| Q |
511 |
nnnnnntggtgagtttttact |
531 |
Q |
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||||||||||||||| |
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| T |
26966741 |
aaaaaatggtgagtttttact |
26966721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 113 - 297
Target Start/End: Complemental strand, 31615439 - 31615255
Alignment:
| Q |
113 |
gaagatcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattg |
212 |
Q |
| |
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| T |
31615439 |
gaagatccgatgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactg |
31615340 |
T |
|
| Q |
213 |
tccaacaaagaaaaaagttgagaggggtttagatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcct |
297 |
Q |
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||| |||||||| ||||||||||| | || |||||| |||||||||||||||| || |||| ||||||||||||||||||| |
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| T |
31615339 |
tcctacaaagaagaaagttgagagatcaattgagggacaagttactgagatagtttataagggtactcataatcatcctaagcct |
31615255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 41271244 - 41271300
Alignment:
| Q |
117 |
atcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtga |
173 |
Q |
| |
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|||| ||||||||||||||||| |||| ||||| |||||||| || ||||| ||||| |
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| T |
41271244 |
atcaaatgatggatacaattggcgaaagtatgggcaaaaacatgttaaagggagtga |
41271300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 297
Target Start/End: Original strand, 3669194 - 3669370
Alignment:
| Q |
124 |
gatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtccaacaaaga |
223 |
Q |
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||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||| | || | ||| ||| |||| |
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| T |
3669194 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatgaaga |
3669293 |
T |
|
| Q |
224 |
aaaaagttgagaggggttt---agatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcct |
297 |
Q |
| |
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| |||||||| ||| ||| ||||||||||||||| | ||||| || ||||| |||||||| |||||||||||| |
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| T |
3669294 |
agaaagttgaaaggtctttggatgatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcct |
3669370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 26332628 - 26332446
Alignment:
| Q |
115 |
agatcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtc |
214 |
Q |
| |
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||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||| || ||||| | || ||||| |
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| T |
26332628 |
agatcggaagatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcacgaatccaaattgct |
26332529 |
T |
|
| Q |
215 |
caacaaagaaaaaagttgagaggggtttagatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcct |
297 |
Q |
| |
|
||| ||||| ||||| ||||||| ||| |||||||| |||||||| || || || || || | |||||| || ||||||||| |
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| T |
26332528 |
caatgaagaagaaagtcgagagggatttggatggacagattactgaaattgtatataagggaactcataaccaccctaagcct |
26332446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 40471516 - 40471422
Alignment:
| Q |
122 |
atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca |
216 |
Q |
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| T |
40471516 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca |
40471422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 30409182 - 30409086
Alignment:
| Q |
118 |
tcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtc |
214 |
Q |
| |
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||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| || || ||||| ||| | ||||||||| |
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| T |
30409182 |
tcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
30409086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 30395515 - 30395454
Alignment:
| Q |
124 |
gatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaag |
185 |
Q |
| |
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| T |
30395515 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaag |
30395454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 17665311 - 17665257
Alignment:
| Q |
107 |
ttagtagaagatcagatgatggatacaattggagaaaatatggacaaaaacaagt |
161 |
Q |
| |
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|||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
17665311 |
ttagcagaaaatcagatgatgaatacaattggagaaaatatggtcaaaaacaagt |
17665257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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