View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_45 (Length: 394)
Name: NF0953_low_45
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 33051251 - 33051379
Alignment:
| Q |
10 |
aataatatatgaagtgttaacaacgtaactatatatcaccatattctttattaattaaaattgaaattaatctcttctaagttatgttgatttcatataa |
109 |
Q |
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| T |
33051251 |
aataatatctgaagtgttaacaatgtaactatatatcaccatattctttattaattaaaattgaaattaatctcttctaagttatgttgatttcatataa |
33051350 |
T |
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| Q |
110 |
ataggagagattatattggaaaatatgta |
138 |
Q |
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| T |
33051351 |
ataggagagattatattataaaatatgta |
33051379 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 33051428 - 33051519
Alignment:
| Q |
159 |
accgcaagtcgaatatatttgcacatatatattttttgaaaaaacaaagcaaaatttcaattagaagagaatataaagggtactagacctac |
250 |
Q |
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| T |
33051428 |
accgcaagtcgaatatatttgcacatatatattttttgaaacaacaaagcaaaattccaattagaagagaatataaagggtactagacctac |
33051519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 33051601 - 33051665
Alignment:
| Q |
301 |
ccctcgagtccagattaacacaccagttatagaaaagacagtgtcccattgtctttgtcagaaat |
365 |
Q |
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| T |
33051601 |
ccctcgagtccagattaacacaccacttatagaaaagacagtgtcccattgtctttgtcagaaat |
33051665 |
T |
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