View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_47 (Length: 386)
Name: NF0953_low_47
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 42113782 - 42114160
Alignment:
| Q |
1 |
gtgtcttccattaggtattcttcaaggtttacttgtctatttcaatccattggaacatcgtgttccggcgttgttacgacaaacatttgttattctagaa |
100 |
Q |
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| T |
42113782 |
gtgtcttccattaggtattcttcaaggtttacttgtctatttcaatccattggaacatcgtgttccggcgttgttacgacaaacatttgttattctagaa |
42113881 |
T |
|
| Q |
101 |
gacgacaccgttctctgcgcttacccgttcttaaacagcgttgtgttcgccgcattcgctgctgcatattgtgcatggttattgttctcatgttggaagg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113882 |
gacgacaccgttctctgtgcttacccgttcttaaacagcgttgtgttcgcggcattctctgctgcatattgtgcatggttattgttctcatgttggaagg |
42113981 |
T |
|
| Q |
201 |
ttttatcattggtgattaacaaaggattaaggattcgaatctacgcattgggttctgtcgttttggtggctcttcctcttcaggttgtatcgttggcctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42113982 |
ttttatcattggtgattaacaaaggattaaggattcgaatctacgcattgggttctgtcgttttggtggctcttcctcttcaggttgtgtcgttggcctt |
42114081 |
T |
|
| Q |
301 |
caccgttctatggagtcctgaagatgatatttacggcgtcgtttcattggtggtgtttttctgtgcttttttctgtgct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42114082 |
caccgttctatggagtcctgaagatgatatttacggcgtcgtttcattggtggtgtttttctgtgcttttttctgtgct |
42114160 |
T |
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