View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0953_low_48 (Length: 385)
Name: NF0953_low_48
Description: NF0953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0953_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 30 - 375
Target Start/End: Original strand, 40276369 - 40276714
Alignment:
| Q |
30 |
gcattgttaggagaatcatcgaacaaagttttcgcttcataatcaccatccacattattggcaatttggatattattagaactattagaatgaggaagcc |
129 |
Q |
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| T |
40276369 |
gcattgttaggagaatcatcgaacaaagttttcgcttcataatcaccatccacattattggcaatttggatattattagaactattagaatgaggaagcc |
40276468 |
T |
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| Q |
130 |
gcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagtt |
229 |
Q |
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| T |
40276469 |
gcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagtt |
40276568 |
T |
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| Q |
230 |
aacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatg |
329 |
Q |
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| T |
40276569 |
aacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatg |
40276668 |
T |
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| Q |
330 |
atggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
375 |
Q |
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| T |
40276669 |
atggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
40276714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 134 - 370
Target Start/End: Original strand, 39625193 - 39625429
Alignment:
| Q |
134 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
233 |
Q |
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| T |
39625193 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39625292 |
T |
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| Q |
234 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
333 |
Q |
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| T |
39625293 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39625392 |
T |
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| Q |
334 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
370 |
Q |
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| T |
39625393 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 134 - 370
Target Start/End: Original strand, 39634743 - 39634979
Alignment:
| Q |
134 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
233 |
Q |
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| T |
39634743 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39634842 |
T |
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| Q |
234 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
333 |
Q |
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| T |
39634843 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39634942 |
T |
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| Q |
334 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
370 |
Q |
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| T |
39634943 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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